Plant Circular RNA Database

Detail information of BGIOSGA032842_circ_ig.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA032842_circ_ig.1
					
						ID in PlantcircBase
						osi_circ_008375
					
						Alias
						Chr11:22057833_22061668(MH63RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr10: 11234540-11238039  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							TT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	BGIOSGA032842_circ_ig.1
ID in PlantcircBase	osi_circ_008375
Alias	Chr11:22057833_22061668(MH63RS2)
Organism	Oryza sativa ssp. indica
Position	chr10: 11234540-11238039 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ig-circRNA
Identification method	CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	TT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCTGACAGGTGCTGTTCAGGAAGAAGCTGAGTTTCATGGTGTCATTTCAAGCTCAACATATGAG
ATGTGCTCCTCATTTGATCAAATTGGTTGTTAAAGGattttttaggcatactaatgcattatcc
atagcctctaattcttcatatgatgttttttgcttaatgtattcgacctatagtccaattacag
tccatatg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATTTTTTAGGCATACTAATGCATTATCCATAGCCTCTAATTCTTCATATGATGTTTTTTGCTTA
ATGTATTCGACCTATAGTCCAATTACAGTCCATATGCACTGTAATTACAGTTGTAACTTCTATT
ATTTCTCACTGTAACTGAATGCAGGTAGTTAGATTATTTTTATTTATCATGCTTTGCATCTAAA
TTTTGCCATATATAAATTTGTGCTAGATGTAATTTTTGACAAATATCAGAGATGGTGCATAATA
ATAGGTAAGCATGATTTTTCTAACCTTCAACTGTCTTCTTGATTTTTAATTCTTCAGACTCGAT
TATGTCTCTTTACATGTCTTTGATTGTGTATTCCCTGTAACTTAAGCATGTAATCTATGACATC
CTGCATGTTTGGGTCATTTTATACTATGTTACAATCTGGAATAATGTTGATTCTATCGAAAGAG
TACTGAATTTCTACGAGAAAGTTAAGCATGATTCCAGTTACAGTCCATATGCACTGTAGTTACA
GTTGTAGCTTTTGTTATTTTTCCCTGTAACAGAAATGCATGTATAGGTTATATGTAATATATTT
TTAGAACATGTTAGAATAGGAAGTAATGCATAAGTACTGAAATTTCTGAGAGAAGCTACAGTAG
GAATTAATGCTGATGTTATTGCGTTAGTACTGAAATGAAAATTCAACACAAGTATGTTCGGTGC
ATGTTTTGTGTTTATATAAGTACTTAATTTTTTATTTCATTTGAATAGGAAAATCTGCATATAG
TTTAGTGACATAATTTTGTAATTATGTCATTAGATTCTTTGCAGATTTTGTTGCTCAAATGTAG
TCAAAAATTAGATATGTTATAGTTCAACTTTAGTTGCATAGAAAGTTTAGAATGCTAGCCCACT
ATAATTACAATGTTTCAATAGTATCTTGAAAGATTTTGCATGAATACTGTAATAACAATGCCAT
TCTAATCTGGAACAACTTTGGTGTTCTGAATTTTGGTTTCTTCAGTATGTTTTGCCATAATATT
GCTCTTATCTAATTCTTGGCTTTTTTTTTTCACATCTTGTACTGCTTCATGACCAGCAACTGGA
GAAAATTGAAGTTTTCATGAGAAACTACAGTGTTATGTTTGGTAAGTTATGAAAGAAACATTTA
TACTTGTTTTTTTTGTACCTTTCATCTGTATTGGTTCTTTTTTCTTGGTCTGCAACTTGATGTC
CTTGGTTGTTTCTGCAGCTGAAATTGTTCCTGCAAAATGTTATTGAAAGCATTACAAAGCATGT
TAGTTTTGTATGTTCTAGGAAATCTAACTAATTAACCTAAATATTTTGGTTTTCATATGCTCTA
GGTAATCTGACTATCAAACTTAAATATTTTTGGGTTTCATGCAGTCTGAAATTATAGTAATTAT
AACTTAAAACATACTTACAGTTCAACTCATCACCACTTACAGTGCAGTTACAATCAAAATATAC
CTCACTTACAGTTGTAATTTCTGTTATTTCTCACTGTAACTAGCTGTTGGTAGTTAGAGCTTGT
AATTGATTGACATTGGTTTATTACTGATTTGTGTGAAAACTAGGACACTTGTAGTTTGGGAACC
CTTGGGACTCTTTTTTTTTTGGTTAGTTGTGCATGCAAAAGTTAGAATATGTGTGCTTTTAGTT
TCATAAAAACATAGTGAGCTTGTAATGCTTCCCCTTGTGTTCTAGGTTTTTTTCCAATCACTGC
AGTGTATGGTAATCATCCATTTTTGAATTAGTTATATGTTTTACTGAAATTTAGCTAGCCTTCT
TGCATCATTGCAAGTGTGAGGCCATTTCATTTATGTTGTCTGTTAGTGTATGCAACCAACATTA
ATTTTTTTTCTTTGTGTTTGCATAGATTCTGATTGAGTGCTTCCTGGACATAACTCTTATTTGT
GTACTAATTCTTTTCATTCAAATAGAAAAGGAGAACTTGTGCCTTTATGGTTTATTAGTGCTTT
TTATTTCTGTTGCAGCGTTTAGATGTTTTCTCTTAGGAAAATACCCTAGAAAAATATATCTCTT
GAGGCATTTGAATTGCTGATCTAAATCTGTATATGATGCCCACTTCTTACATCTAGTGATTTAG
TTAAGTTGTTTTCAAATGGTATTTTGAGTTATGAATTTTGTTTATCATATGAAGTCAATATTTT
AGGTTTCATGTAGTCTTAAAACACACTTACAGGGCAACTCATCTCCACTTATAGTGTAGTTACA
GTGGAAATGTACCTCACTTACAGTTGTAATTTCTGTTCTCTCTCACTGTAACTGACTGTTGGTA
GTTAGATTCCTCCTATTTTAGCTCCAAAGTTGTATCCATTCAATAACTACCAGTTACTTTATGC
TCACTATTTATAGTCTTTCCCTGTTGATTTGACCAATTTAGTGGTGGAAGCTTCGCATTCTTCT
CGTCAGGTAGCACATGGCTCATTTGTGTGCTAACTTAGGCTAAATCACTAGAGAGCGAAACTTT
CACTTTGTGCAAATATATCCAGTTGGTTGCTAAGAGCAATCCCAAATTTGATGGTTCTGTATAC
TCAAATTGGCTGCTTAAACTAAAAATATAAATATCTCAAAACACTGGTAAACCAAAGACCATAT
TGATACTCTACTTTTTGGATAGATTATAACTCTATCCCTGCAGAAGTGAGATTCAAGTCTGTTT
GTTGTTACCTTAAAACACACTTACAGTGCAACTCATCACTACTTATAGTGCAGTTACAGTAGAA
ATATACCTCACTTACAGTTGTAATTTCTGTTATTTCTCATTGTAACTGGCTGTTGGTAGTTTTT
GATATTGGTTTTATCAGTGAATTGTGCAAAAACTGACGGACTTGTAGTTTAGGGAACCCTAGGC
ATCTTCATTTTTTTTTGATCTGTGCCTGATATATTTGTTTTTGCTAGTTATTAATGTAGGCCTA
GTTTTGTACTGTTATTTTCTATTATCTGTGTTGCTTTGTGTTTCATGCAGCACCATCTATCACT
AGTATAACTTAAATATACTTACACTTCAACTCATCACCACTTACGGTTCAGTTACAGTGGAAAT
ATACCTTAGTTACAAATGTAATTTTTATTATTTATTTTTGTAACTAACTGTTGGTAGTTTGATC
TTCATTTTACTTTCTGAACTTGTCACGGTGTCCCTGTCAAGGTACCATGTATATGTCGAATCTA
GGGAGGCTGATGCCCTGCTAGATGGGCATTTTTATAGTTATTATGAATTTTTAGTTCAGAGTTA
ATTTTGGCATATAGGACTATATGATTTCAGTTCTTTGGTTCATAAAGAAAATTTTTCGTGCACA
AAGAAAATCCCCATTTTTGCAGATTTCTCGTTGCATATGCTAGCAGTTTACTGATGCACTGTTT
TCTGCAATCCTGACAGGTGCTGTTCAGGAAGAAGCTGAGTTTCATGGTGTCATTTCAAGCTCAA
CATATGAGATGTGCTCCTCATTTGATCAAATTGGTTGTTAAAGG
						
					

			
		

Sequences
Splice junction sequence	CCTGACAGGTGCTGTTCAGGAAGAAGCTGAGTTTCATGGTGTCATTTCAAGCTCAACATATGAG ATGTGCTCCTCATTTGATCAAATTGGTTGTTAAAGGattttttaggcatactaatgcattatcc atagcctctaattcttcatatgatgttttttgcttaatgtattcgacctatagtccaattacag tccatatg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATTTTTTAGGCATACTAATGCATTATCCATAGCCTCTAATTCTTCATATGATGTTTTTTGCTTA ATGTATTCGACCTATAGTCCAATTACAGTCCATATGCACTGTAATTACAGTTGTAACTTCTATT ATTTCTCACTGTAACTGAATGCAGGTAGTTAGATTATTTTTATTTATCATGCTTTGCATCTAAA TTTTGCCATATATAAATTTGTGCTAGATGTAATTTTTGACAAATATCAGAGATGGTGCATAATA ATAGGTAAGCATGATTTTTCTAACCTTCAACTGTCTTCTTGATTTTTAATTCTTCAGACTCGAT TATGTCTCTTTACATGTCTTTGATTGTGTATTCCCTGTAACTTAAGCATGTAATCTATGACATC CTGCATGTTTGGGTCATTTTATACTATGTTACAATCTGGAATAATGTTGATTCTATCGAAAGAG TACTGAATTTCTACGAGAAAGTTAAGCATGATTCCAGTTACAGTCCATATGCACTGTAGTTACA GTTGTAGCTTTTGTTATTTTTCCCTGTAACAGAAATGCATGTATAGGTTATATGTAATATATTT TTAGAACATGTTAGAATAGGAAGTAATGCATAAGTACTGAAATTTCTGAGAGAAGCTACAGTAG GAATTAATGCTGATGTTATTGCGTTAGTACTGAAATGAAAATTCAACACAAGTATGTTCGGTGC ATGTTTTGTGTTTATATAAGTACTTAATTTTTTATTTCATTTGAATAGGAAAATCTGCATATAG TTTAGTGACATAATTTTGTAATTATGTCATTAGATTCTTTGCAGATTTTGTTGCTCAAATGTAG TCAAAAATTAGATATGTTATAGTTCAACTTTAGTTGCATAGAAAGTTTAGAATGCTAGCCCACT ATAATTACAATGTTTCAATAGTATCTTGAAAGATTTTGCATGAATACTGTAATAACAATGCCAT TCTAATCTGGAACAACTTTGGTGTTCTGAATTTTGGTTTCTTCAGTATGTTTTGCCATAATATT GCTCTTATCTAATTCTTGGCTTTTTTTTTTCACATCTTGTACTGCTTCATGACCAGCAACTGGA GAAAATTGAAGTTTTCATGAGAAACTACAGTGTTATGTTTGGTAAGTTATGAAAGAAACATTTA TACTTGTTTTTTTTGTACCTTTCATCTGTATTGGTTCTTTTTTCTTGGTCTGCAACTTGATGTC CTTGGTTGTTTCTGCAGCTGAAATTGTTCCTGCAAAATGTTATTGAAAGCATTACAAAGCATGT TAGTTTTGTATGTTCTAGGAAATCTAACTAATTAACCTAAATATTTTGGTTTTCATATGCTCTA GGTAATCTGACTATCAAACTTAAATATTTTTGGGTTTCATGCAGTCTGAAATTATAGTAATTAT AACTTAAAACATACTTACAGTTCAACTCATCACCACTTACAGTGCAGTTACAATCAAAATATAC CTCACTTACAGTTGTAATTTCTGTTATTTCTCACTGTAACTAGCTGTTGGTAGTTAGAGCTTGT AATTGATTGACATTGGTTTATTACTGATTTGTGTGAAAACTAGGACACTTGTAGTTTGGGAACC CTTGGGACTCTTTTTTTTTTGGTTAGTTGTGCATGCAAAAGTTAGAATATGTGTGCTTTTAGTT TCATAAAAACATAGTGAGCTTGTAATGCTTCCCCTTGTGTTCTAGGTTTTTTTCCAATCACTGC AGTGTATGGTAATCATCCATTTTTGAATTAGTTATATGTTTTACTGAAATTTAGCTAGCCTTCT TGCATCATTGCAAGTGTGAGGCCATTTCATTTATGTTGTCTGTTAGTGTATGCAACCAACATTA ATTTTTTTTCTTTGTGTTTGCATAGATTCTGATTGAGTGCTTCCTGGACATAACTCTTATTTGT GTACTAATTCTTTTCATTCAAATAGAAAAGGAGAACTTGTGCCTTTATGGTTTATTAGTGCTTT TTATTTCTGTTGCAGCGTTTAGATGTTTTCTCTTAGGAAAATACCCTAGAAAAATATATCTCTT GAGGCATTTGAATTGCTGATCTAAATCTGTATATGATGCCCACTTCTTACATCTAGTGATTTAG TTAAGTTGTTTTCAAATGGTATTTTGAGTTATGAATTTTGTTTATCATATGAAGTCAATATTTT AGGTTTCATGTAGTCTTAAAACACACTTACAGGGCAACTCATCTCCACTTATAGTGTAGTTACA GTGGAAATGTACCTCACTTACAGTTGTAATTTCTGTTCTCTCTCACTGTAACTGACTGTTGGTA GTTAGATTCCTCCTATTTTAGCTCCAAAGTTGTATCCATTCAATAACTACCAGTTACTTTATGC TCACTATTTATAGTCTTTCCCTGTTGATTTGACCAATTTAGTGGTGGAAGCTTCGCATTCTTCT CGTCAGGTAGCACATGGCTCATTTGTGTGCTAACTTAGGCTAAATCACTAGAGAGCGAAACTTT CACTTTGTGCAAATATATCCAGTTGGTTGCTAAGAGCAATCCCAAATTTGATGGTTCTGTATAC TCAAATTGGCTGCTTAAACTAAAAATATAAATATCTCAAAACACTGGTAAACCAAAGACCATAT TGATACTCTACTTTTTGGATAGATTATAACTCTATCCCTGCAGAAGTGAGATTCAAGTCTGTTT GTTGTTACCTTAAAACACACTTACAGTGCAACTCATCACTACTTATAGTGCAGTTACAGTAGAA ATATACCTCACTTACAGTTGTAATTTCTGTTATTTCTCATTGTAACTGGCTGTTGGTAGTTTTT GATATTGGTTTTATCAGTGAATTGTGCAAAAACTGACGGACTTGTAGTTTAGGGAACCCTAGGC ATCTTCATTTTTTTTTGATCTGTGCCTGATATATTTGTTTTTGCTAGTTATTAATGTAGGCCTA GTTTTGTACTGTTATTTTCTATTATCTGTGTTGCTTTGTGTTTCATGCAGCACCATCTATCACT AGTATAACTTAAATATACTTACACTTCAACTCATCACCACTTACGGTTCAGTTACAGTGGAAAT ATACCTTAGTTACAAATGTAATTTTTATTATTTATTTTTGTAACTAACTGTTGGTAGTTTGATC TTCATTTTACTTTCTGAACTTGTCACGGTGTCCCTGTCAAGGTACCATGTATATGTCGAATCTA GGGAGGCTGATGCCCTGCTAGATGGGCATTTTTATAGTTATTATGAATTTTTAGTTCAGAGTTA ATTTTGGCATATAGGACTATATGATTTCAGTTCTTTGGTTCATAAAGAAAATTTTTCGTGCACA AAGAAAATCCCCATTTTTGCAGATTTCTCGTTGCATATGCTAGCAGTTTACTGATGCACTGTTT TCTGCAATCCTGACAGGTGCTGTTCAGGAAGAAGCTGAGTTTCATGGTGTCATTTCAAGCTCAA CATATGAGATGTGCTCCTCATTTGATCAAATTGGTTGTTAAAGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA032842_circ_ig.1

Address

Any questions?

Supported by