Detail information of AT2G05940_circ_g.1


General Information
CircRNA Name AT2G05940_circ_g.1
ID in PlantcircBase ath_circ_012945
Alias 2:2288409-2288785
Organism Arabidpsis thaliana
Position chr2: 2288409-2288785  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05940
Parent gene annotation Serine/threonine-protein kinase RIPK
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G05940.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACTCATAAACAAGAGTTCTATGTTCTTCCTCACAACAATAACCAATCAATTTCACCAAATT
TTTGTGCTTCAATTGTCCCAAAAACATAACTTCCGTggaatctaacaagatattggaggctttg
aaatcccgatagataacaggattttcagcttcgtgtagaaattgaagtcctgttgcagctccat
gagcgatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATCTAACAAGATATTGGAGGCTTTGAAATCCCGATAGATAACAGGATTTTCAGCTTCGTGT
AGAAATTGAAGTCCTGTTGCAGCTCCATGAGCGATCTTCATTCTTGTTGACCATGGAAGCGAGG
CAGAGTATCCTGAAAGATTAATCCAAAGTCGCTTAGAAACACTTGTCATAAGATTAGTTCCAAA
AATATATTTATCTGAATAAGAAAACATAGAGAAAGAGAATGAGCCTTACTTCTGAAAAGTTGAT
TCTCTAAGCTTCCACGAGGCATGAACTCATAAACAAGAGTTCTATGTTCTTCCTCACAACAATA
ACCAATCAATTTCACCAAATTTTTGTGCTTCAATTGTCCCAAAAACATAACTTCCGT
Conservation Information
Conserved circRNAs NA
PMCS 0.257175708
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020