Detail information of BGIOSGA002010_circ_ag.1


General Information
CircRNA Name BGIOSGA002010_circ_ag.1
ID in PlantcircBase osi_circ_011438
Alias Chr01:8011144_8015678(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 8712345-8716894  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGTTTGAACCGTCCATGGAGACATGTGACACGAAGTCTCGCATCAGACACGATGCCTCATAT
GCGTCGGTAGCCTTGACAATGACAAATGACAAGTACcttaggaaaagcagtggcattcctcagt
tcctggaaccttggattgatgaagagccttccagtggttgacagcagttcgtcagctttgtcac
tcgtaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGGAAAAGCAGTGGCATTCCTCAGTTCCTGGAACCTTGGATTGATGAAGAGCCTTCCAGTG
GTTGACAGCAGTTCGTCAGCTTTGTCACTCGTAAAGTTCAAGTCAAGCTCATCCGTCAGATTCT
GCAAATTAACACAAGCAATTCTAGTTAGTCAAAAAATGGTAAACCTGTGTTCAATAACTTGATA
GGAACTTAGCTTATGTATTTTTTTCCAGAAGCTAAAGATGCAACAGTACATGCACCAGTAAATA
TATGTCTATATTATACTCAGTGATTTTCAGACTTCAGGGTCATTAATACAAACAAACGAAGTTG
CTGTTATGGAATATATTCTATCAGTATTCCGTAGTGTTAAATGACATACAGATACATGGCCAAA
ATACAGCATTACTACAACATTGTAACTACTAAAATGTAGAAGGTACTAAACATGCAAATTCACA
TATAGTCCTTGATCGATTCCCATTAATTTACAATGTCAAAAGAACTATACAGTGCAAATCTGTA
TCTGCTAGATTAGATACACCCTCTGGTGTGCAGGATTAATCATGAACCGGCCAATTGAGATGTG
CAGACCATGCCCCAGCATCAAAATAACTCAAACATGAATAGCACAAATGCACAAAGCACATCAG
CATGCAGCGATGAGATAGAGCAAAGAAGTGAAGAACAGCGCAGCGTACGTACTATCTGTCTCAT
CATCCTCTCCGCGGCAGATCGAATGTGGCAGCTCCCAAGCGCGGACGTGGCGAGAGGAGTGGTA
CATCGTCGGCAGCTGGGGCATCTTGTACTTCTTGCACTCGAGCACGATTCTGGTGACCAGGTCG
ACGGCGAACATCCACGAGTTCCGCGAGGTGATCTGGAAGAAGAACACCACGCCGAGCTCCTTGG
GGTGGAGGAGCGCGAGCACCGGAACGCGCCGCGGCATCATGGTCTTCCGGTATGTTATGTGGTC
CCAGATCTCGTCGACGCGCACCCGGTGGCGGAGCGACCAAACCGACTCCTTCCCCGCATCAGAC
TGCTGCAGCGTCCACAAGCTGATCATGATCGTCGATGGCGCGCCGCGGCCGGCGGCGGCGTCGT
CGTCGTGGATCTGCACGAACGCCAGCTCGCCGTCGCTCACGTTCACGCACCGGTGCTTGGCGTG
GTCCGCGTCGCTGGAGTACGGTAGCTTGCATCCCTCAGGGAGCGGCACGAAGCGCATGTCTGGC
TTCGCGGCGAACACGTCGCAGGTGAGGAGGCCGAAGGAGAGGTCCACCCACCAGAGCATCCCGG
CGTGGACGATGACGCCGTCGCCGCACCACGACCGGCGGCCTGGCGGGTAGTTGACCTTTGTTGA
AGCCCACCCTCCGAGCTCATGGGAGTAGCGTAGTAGGGTGGCGCGGTGGATGCCATTGCCGGAC
TCTATCTGGAGCTCGGCCAACAAGCGGATCAGGTGGTCGCGATCCGCCGTTCTGCGGATCATGC
CGACGTTCCCGGCGCAGAGGAGCCGGTACTCGTCGGAGCAGGGCGGGTAGAGGTAGGCCATGCG
GAGCGTAGCGTGGCAGAGGATGTAGCCGCCGTCGTTGGTGCAGCTCGGTGCAGGGTCGAATCCG
AGCGCGACGCCGGGGCCGAAATCGTGGGCGCTCCTCCTGGCGCCGCGGAGCAGGAGTCCGCCGG
CGGAGTCGACGGCGACGACGTAGGGGTGGTCGTCGCGGTCGGGGCAGAAATCCCGAGGCGCGGG
GGAGACAGGGACAGAGTCGCTCTGGCGCAAGGTGAGGAGGGAGACGCCCGGCGGGTCGCGCCAG
TCGACGGCAAGGTGGTCGCCGGCCTCGAAGTCGCTGTCGGAAGAGGACACGCTCGGGACGCAGG
CCAGGATCACCCACGTGGCCTCCCGCGGCGGCGCCGCCATCCTCTCGTCCCGCCGGAACTTGGG
CGCCGCGCCGTCGAACAGGTGCGGGCTATGCTCCATGCGTATCTTGCTGCTCCGAACTTCCGAA
GCGGCGGCGGCGGCGGCGGCGTTGGAGTGGTCGGTGGCGGCGATGGGCGGGGTGGGATGAACTG
GAAATGGGCTGCTCCCCTCGATTGGTTTGCCGCTTTAACGGAGCCAGAACCCGGAGGGGCGAGA
AGGTTCTAAATTCTAATCGCATCCCGGTGTTTGGCAATTGGCACTTTGGCTTGCTGACCAAGCC
GGTTAGTTACGGTTATCACCATCTAACCACCCTACAGTGCGGTGATTTTTTTCACTAATCCATG
TGGTTGTAAGCTCTGACGGTAATTTTTCGTTAATCTCATGTTTCTTTTAGACAAAAAGGTTATT
AAAAACTAGAGCATTGCAAAGCTGTGGATCGAGGAGGATTCACCAAACCAAACCGCACCGACGT
ATCGTGGTAGTCCATTGTACGCTTGTTTGGGACCATGGGTTAGTTTGTCTTTCAGAGAAGAAAA
AAGAATGTTACGCTTGTTGCCTTGTTTCCTATGCTCGACTTGTCGCGGCCGGAGATTGCACGGT
GCGCCAGGCCGCCAGTTGGCAGATGCCGTTTGTGACGGACGATGTGGTGCGGTCCGTGTATGGC
AAAAAATGGAGTGAAGCTAAGCCACCGCGCGTGCACTTCCCACCGATCGCGATTCACAGCCGCA
CGGGCACACGGCACACTAGTACCAGTACTACTCCCACGCGAACGAATCATCGGAAGTGGCCGTG
CGCGCGTTCCGGCCGCTACATCGCGCCGCGGCAGCGCGCAAGCCGTGGAAGAGGCCAAGCGTCT
TGTGCGGCTGCTACATTTGCCTCCGCTCCAAATAGAGACGTTGGTACTGTACTACCGTGTTTTT
CAGGCTCACCATCAGCAGTAGTACTCTGTAACAATAGGCTTGGACGGCTGCCCCAAGTGGTTAT
CGGTTTATCACTAATCAGGTTCTCTAACCTCGAACAAATCCCCATCTTATATGAGATTTAGCAC
GCATCAGCCAGCACACACAGTTGAGGAATGCCGTGAACAAGACATTAATCGATGAACTGTTTGT
CATAAACACGTGGTTTATGACAATATTTCATCAATTTGTCATACAGAAAGTTCAAACAGTCGAT
CTTATTTGATCCTGCAAGCTAACACAAGCAATGCTAGTTGATAAAAAAAGGGTGCTAATTTATA
GTATTTGATAGTTTGCGAGGAACTAGTCATCTGTAAAAATGTTAACAAAAACCCAAATCAGGTA
AATGCTATATTTGTCACGTGAAATCAAGCTGCAAACATACTTGGCTTCAAACCCCCAGCAGTTG
CAAGTTGCAACAGTACATTAATTCTACTATACGGTTGCACCAGTACATATTACATTCGCTAATT
TTCAGACTTCATAACCATGGTAGCCACTAACACCAACTAAATGAGGATATGCTCTACATGCAGT
TGATGTTTCCATGATGAAATAAACCAGCCTTGGTGCTAGCATCAGTACACAATCATAGTACTAA
AAGTCCCTCGCACTTCGTCCTTTTTTTTAGATGGATCTTTGAATACTTTTGCACTTGCATTATT
ACTTATTAGACAGCGATAACTGTCTAGCATGCAGTTTTATGAATCAGAGTATGAATATTCAAGA
TCATATGAAAGGAGCAAGCATGCATGCAGCGCTGTAGCCTTTCAATCTGTACGGAGTACTAATT
ACCAGCTTATTGTTGGAATAATCCTCACACTTGTGTATTTTCAACACAAAACAAATATATTATC
AAAATTGATTCAACGTTAGAATTAATAAAACTAATTTATATTTTAGATGCTGATAATTTTTTCT
ATAAGCTTTATCAAACTTAACAAAGTTTGATTAGGAAAAAAAGTTAAACGGTTTATAATATGAA
ACGGTGGGCCAAAAGTTTGCTAGAATTATTCTGCGGCTGCTCAAAACCGTGGTTCAGACGTTCT
GTAATTGTAACTGAGATAGTAACTAATAGTCTCCTAATTGTTCTGTACAATACTAATCATCGTA
TTCGTATGGTTCTAGCAGGTTCAGCAAACGGAGGAACAGGAGCAAACTAAACGAGTTAGCCTGA
ACATACATTCACTGATACATAGTATTAAAACTCTGTACGGAAGTATGGCAGTGATATATAGTAA
AAATATGAATTCACATATCATAAAATTTCTCAACCGCATACCAGTTAGGAAATCTAAACAATCA
CCCATCAAATATGCGAGAACTAGAACTCAGCGTACCATCACGAACAATGTCGTCAGCCATCCAT
CAGTTAACAAACACTGGTTGTCCAAGATAGCAGAGAGTTAAGCCAGATATCTAATTAAAGACAC
TACGCAGCATCAGTCAGGGCGTTTGGTTTCTGAACTGCCTAGTGCCCCGGATATGTCAAACAGA
GGAAGCAGGGAGAAGAAACAAGATTTCCAAACAAAACTTTCATCTGAAACTCAACACTGAACTA
TTCATACAATACTTTCACCTGAAACTCTAGGAACTATGTTTGAACCGTCCATGGAGACATGTGA
CACGAAGTCTCGCATCAGACACGATGCCTCATATGCGTCGGTAGCCTTGACAATGACAAATGAC
AAGTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021