Plant Circular RNA Database

Detail information of Os03g0682600_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os03g0682600_circ_g.7
					
						ID in PlantcircBase
						osa_circ_020996
					
						Alias
						Os_ciR785
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 27172548-27173336  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os03g0682600						
					
						Parent gene annotation
						
							Protein argonaute 11. (Os03t0682600-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0682600_circ_g.6 						
					
						Support reads
						41/3
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0682600-00:3

General Information
CircRNA Name	Os03g0682600_circ_g.7
ID in PlantcircBase	osa_circ_020996
Alias	Os_ciR785
Organism	Oryza sativa
Position	chr3: 27172548-27173336 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os03g0682600
Parent gene annotation	Protein argonaute 11. (Os03t0682600-00)
Parent gene strand	-
Alternative splicing	Os03g0682600_circ_g.6
Support reads	41/3
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0682600-00:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGTAAACACCTTGAATAAGCATCACGAATGTTCATGTTCAGATAGTCCAATGCAAAGTCAATTA
CTGGCTGAGCCTTGTAAAATGTTGTTGCAGAAATATctctaaaatactattctccctttcttct
ggtgtctcacgtgccaacctcaacatgcgtgtgacttgacattcatttaattttctagaatagc
gttgtcct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 155
Transcript exons: 27172548-27172640,27173275-27173336
CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT
TGACATTCATTTAATTTTCTAGAATAGCGCAGATAGTCCAATGCAAAGTCAATTACTGGCTGAG
CCTTGTAAAATGTTGTTGCAGAAATAT
Transcript length: 171
Transcript exons: 27172548-27172640,27173259-27173336
CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT
TGACATTCATTTAATTTTCTAGAATAGCGCACGAATGTTCATGTTCAGATAGTCCAATGCAAAG
TCAATTACTGGCTGAGCCTTGTAAAATGTTGTTGCAGAAATAT
Transcript length: 341
Transcript exons: 27172548-27172664,27172794-27172926,27173246-27173336
CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT
TGACATTCATTTAATTTTCTAGAATAGCGTTGTCCTTTTACTATGCGGCAAACCTCCATAGGTA
AATATGTTGGCCTGCTGTCGCTGCCAGCCTGAAGGCACGGCCAGTTAATATATTTCAAAGAATA
ACTGTATTGGCGATTGAAGTACTGGACAACTGATACCCTTGTCCCATCTTGATCAAACCTTGAA
TAAGCATCACGAATGTTCATGTTCAGATAGTCCAATGCAAAGTCAATTACTGGCTGAGCCTTGT
AAAATGTTGTTGCAGAAATAT
						
					

						Genomic sequence
						
							CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT
TGACATTCATTTAATTTTCTAGAATAGCGTTGTCCTTTTACTATGCGGCAAACCTGCACAAAAT
ATGTACATTTTATTCTAACAAAATATGTATATGCAAGCATTAGATGTAACATATGTATATGAGT
TACCAAATATAATGGATACATAGGAGCCATAAGAGCCCTAAAGACAAAAGCTACCTCCATAGGT
AAATATGTTGGCCTGCTGTCGCTGCCAGCCTGAAGGCACGGCCAGTTAATATATTTCAAAGAAT
AACTGTATTGGCGATTGAAGTACTGGACAACTGATACCCTTGTCCCATCTTGATCAAACCTGTA
CAAGCAAACATAACAAGTCGATGTATATGATGTGGATAAATAGATAAAATTCAATCTGATCAAA
TAAAAGGTGCTTGCATTGTCCTTCAAAGGAGCTGAAGTTAGCCCAGTAATTTTGTAACGTATGG
ACACATCACGTCGATGTGTGGTCTCAACCCGGACTCCTTTAAGGGCTTTCTTTAGCTACAATGT
AATAAAAACACAAAAACAAGACACAATAATGTAACCATCCGTTTTGTGCACATAAAAAGTTTTA
CTGTGGGTGCAAAGCTACCATGGCACATACTTTCAGACGGTCCTGATCACGTAAACACCTTGAA
TAAGCATCACGAATGTTCATGTTCAGATAGTCCAATGCAAAGTCAATTACTGGCTGAGCCTTGT
AAAATGTTGTTGCAGAAATAT
						
					

			
		

Sequences
Splice junction sequence	CGTAAACACCTTGAATAAGCATCACGAATGTTCATGTTCAGATAGTCCAATGCAAAGTCAATTA CTGGCTGAGCCTTGTAAAATGTTGTTGCAGAAATATctctaaaatactattctccctttcttct ggtgtctcacgtgccaacctcaacatgcgtgtgacttgacattcatttaattttctagaatagc gttgtcct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 155 Transcript exons: 27172548-27172640,27173275-27173336 CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT TGACATTCATTTAATTTTCTAGAATAGCGCAGATAGTCCAATGCAAAGTCAATTACTGGCTGAG CCTTGTAAAATGTTGTTGCAGAAATAT Transcript length: 171 Transcript exons: 27172548-27172640,27173259-27173336 CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT TGACATTCATTTAATTTTCTAGAATAGCGCACGAATGTTCATGTTCAGATAGTCCAATGCAAAG TCAATTACTGGCTGAGCCTTGTAAAATGTTGTTGCAGAAATAT Transcript length: 341 Transcript exons: 27172548-27172664,27172794-27172926,27173246-27173336 CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT TGACATTCATTTAATTTTCTAGAATAGCGTTGTCCTTTTACTATGCGGCAAACCTCCATAGGTA AATATGTTGGCCTGCTGTCGCTGCCAGCCTGAAGGCACGGCCAGTTAATATATTTCAAAGAATA ACTGTATTGGCGATTGAAGTACTGGACAACTGATACCCTTGTCCCATCTTGATCAAACCTTGAA TAAGCATCACGAATGTTCATGTTCAGATAGTCCAATGCAAAGTCAATTACTGGCTGAGCCTTGT AAAATGTTGTTGCAGAAATAT
Genomic sequence	CTCTAAAATACTATTCTCCCTTTCTTCTGGTGTCTCACGTGCCAACCTCAACATGCGTGTGACT TGACATTCATTTAATTTTCTAGAATAGCGTTGTCCTTTTACTATGCGGCAAACCTGCACAAAAT ATGTACATTTTATTCTAACAAAATATGTATATGCAAGCATTAGATGTAACATATGTATATGAGT TACCAAATATAATGGATACATAGGAGCCATAAGAGCCCTAAAGACAAAAGCTACCTCCATAGGT AAATATGTTGGCCTGCTGTCGCTGCCAGCCTGAAGGCACGGCCAGTTAATATATTTCAAAGAAT AACTGTATTGGCGATTGAAGTACTGGACAACTGATACCCTTGTCCCATCTTGATCAAACCTGTA CAAGCAAACATAACAAGTCGATGTATATGATGTGGATAAATAGATAAAATTCAATCTGATCAAA TAAAAGGTGCTTGCATTGTCCTTCAAAGGAGCTGAAGTTAGCCCAGTAATTTTGTAACGTATGG ACACATCACGTCGATGTGTGGTCTCAACCCGGACTCCTTTAAGGGCTTTCTTTAGCTACAATGT AATAAAAACACAAAAACAAGACACAATAATGTAACCATCCGTTTTGTGCACATAAAAAGTTTTA CTGTGGGTGCAAAGCTACCATGGCACATACTTTCAGACGGTCCTGATCACGTAAACACCTTGAA TAAGCATCACGAATGTTCATGTTCAGATAGTCCAATGCAAAGTCAATTACTGGCTGAGCCTTGT AAAATGTTGTTGCAGAAATAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.27809098

Conservation Information
Conserved circRNAs	NA
PMCS	0.27809098

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27173273-27173300(-)
						
						Potential amino acid sequence
						
							MNIRDAYSRFDQDGTRVSVVQYFNRQYSYSLKYINWPCLQAGSDSRPTYLPMEVCRIVKGQRYS
RKLNECQVTRMLRLARETPEERENSILEIFLQQHFTRLSQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27173273-27173300(-)
Potential amino acid sequence	MNIRDAYSRFDQDGTRVSVVQYFNRQYSYSLKYINWPCLQAGSDSRPTYLPMEVCRIVKGQRYS RKLNECQVTRMLRLARETPEERENSILEIFLQQHFTRLSQ*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0682600_circ_g.7

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