Detail information of orai.002G137700_circ_g.1


General Information
CircRNA Name orai.002G137700_circ_g.1
ID in PlantcircBase gra_circ_000155
Alias Chr02:23236688|23240408
Organism Gossypium raimondii
Position chrChr02: 23236688-23240408  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.002G137700
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.002G137700.2:5
Gorai.002G137700.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGCATTCCCTCACCGTGTCAAAGTTTGGATTAAAATCGAGTAGTGCAGAAAGAACAGTGCCA
TAGTGGAGGGGTCTCCTTCTTGCTATGGCAGCAAGActtttgttgtcggtaatccacaacaatt
tgttttcccaacatgacaacaatgtcatcatcagcatcaatctgaaaggaaatgtaaccacatg
tgattttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTGTTGTCGGTAATCCACAACAATTTGTTTTCCCAACATGACAACAATGTCATCATCAGCA
TCAATCTGAAAGGAAATGTAACCACATGTGATTTTGCATACATCTTCAGGTATAGGAACTTAAT
AAAACATAGAATTGAATACTATTAGTCCAAGGGTTTGAAATTTGTGAAATCATCCGAAATTTGT
CAAGTAACTTTAGTAGGTTTTCAAGAGCACAACTTGTTTGAGATGGGACCATTTTGGAAAATAG
ACAAGTCTTAGAGTATATAAGGGAAAAAAAAGAAGGATTTTAGCACATCCAGAAAAGGAAGAGA
ATATTACTTCAGGGTATGCCTTAACAGTAAACTCTTGACTTTCAGTTTGGGAAAGCCATAGCTT
CTTAGAAGATCTTAGATCCATGAAACTAATTTGTTTCGCAAAACTAAGACATGGGTCTGTCTGC
CTTTTTCCCATCATAACTAGATCAAATCAAACCCACTTTATCCAGAACCATATTTTCTCAAACC
TATTCATAAAATGCACAGGTAGCTTGTCCCAGAAAAATGTAGATTTTCCCTAAACCTGCCCATT
GTACAATACTCAATGCAGAGCATATTTGCAAAGCACTTCAACAGAAGTTCATTAAAAATAGGCT
TAATATATCATTTGGTACCTGAGTTTGACACTTTTTCTAATGTGGTACCAGTGTTATTTTTTGG
TACAATTTAGTACCTATATTTGACAAAAGTTATATATTTTGGTACCCAAAGGTAATGGTGTTAA
CTTTTTAGTGTTTAATTCAGTTTTCGGGTTGATTTGATGAAAATTAATTGCTAATATTATTAGG
TTTGAATTTTTCATGTTTTTGTAAATAGAATAAATTTAGTGTTAATTGTGAATTTGTTTAATTT
TGCGAATAGTTTTTCAAATACAGTCCGGTGGATGTGGTTTAATTCCGGTTTTGAAGTTGGTTTG
ATGAAAGTTAATTGCTAATATTATTAGCTAATTATGAATTTCATCAAATCAACTCTAAAAACCA
AATTAAACACTAAAAAGTTAACAATGTTATCTTCAGATACCAAAATGTATAGCTTTTGTCAAAT
ACAAGTACCAAATTGGACAAAAAAATAACACGAGCACCACAACAGAAAAAAGTGTCGAACTCAG
GTACCAAATAATGCATTAAGCCTTAAAAATAATAGAAAATCTTATATTATAAACCCGTGATCAG
CCTATTAGCCTTTGAAGCAGACTGTTCTACAGAACCACTGGCACACTATTACTAATGTTTGAAT
CCTTAATTCTCTAAAAAAGGTGGGTGTCTCTGTTCTCAAGTAATTTTAGATGGTGATAGAAGGG
GTTTAAGGCACATAACTAACAGGTGACGCTTGTGACGAACTTTATGCATCCATGTAAAATTCTA
AGTATGCAGTATGTATTGTAAACTTTGAACTGATAGTAAGAAGGCATTACTCTTTAATTCAATC
AGCTTTGCATGATAACAAACTCCAAGATTACAAACAGTCCAACATTAAGACAGGAGAGAGAAAA
AGAAGCAGGCATTCAGATAATATAGACAAATCAGAATGTATATATATATAGCATGTCACCTGAC
CAACAAGCCGGGCAAGTAACGCCATGCGCATTTCATTACAATCTGACCAATGAAGATGCAGGTA
TGACTCAGCGATCTGTTGAACTGCTGATTTTATCACACTTCTTTCCAGCTCCTCAGTTAGCTCA
ACATATAGAGGTGGCACGGGTAAATCCCGACCAGTCTCATCTAAAGAAGATACGGTAATAGAAG
CCTGGAAATTCTGATCAGACTCTGGAAAAGATGATTCTTCAGTCTCATGTTTAATTTCAGCATC
TGCCTTCATTTCAGTTGAATCTACATCAACCACATAAGGAGAAACTGCATGATTGGAGGAAGTC
TTGACTTCTAGAATGTGAACAATGTCTTCCGCACCACCCACAACATCCCCTTCAGGAGCTGGTT
GCTCAACACTAGTAATTGATGGACCTTCTATTGTGTTATCATTGCTTTGAATGTTAGACATCGG
GCGCAAAGAAGGGTTCTCAACAGCTGGAACTGAAAGAGGCTTATTAGAAATAGAACAATCAAAG
TCAGGCATTGCAGCACCAGTGCCCTCAAGAACAGGTGAGCATGACATTCCAACAGAAACAGCAG
CCCGTCGTGGATCTAGGCGACGAGGATCCTGAAAAGGTTAGCGTTAACTTCCATTTGCTCAACA
GGAGTTATAAAGATCCTAAATCTGGAAAAGGCTGAAACATTTTGAAAAGCAATATATGATGATA
GAAAATGGAAGTTACCCTTCTTGGGTCGCGTTTAGAATCTGCAGCAAAATTGTTGACAGCAGCT
GTATCGGATATTGATGAACTGATTGTAGCAGCTGAAGTAAAGGGCAACTGTGGTGTTGAAACGG
GAGTGTGCAAGGAATTTGTTGAAGCAGGAGGTGGCAGAACTTGAGCCCGACTATTTACATGTAC
AGCTTGCTGAATTGTAGGCAATGTCCCGACCTTTGTTAATGGAGGACTTTTAGGCAAGTGCCTC
ATATTTGTGATGACAATATCTGCCAGCAGGTCAGGATGAATTTTTGAAATAAGAATTTCAAGAG
ATTCAGCACCTCTTTCTCCTTCAGCAAGTAAAGCACCAATCATTGCTATCATTTGCTCAACAGG
AGTTAAATTATCATCCGAAAGAGGAAAACTGGGAGATCCTCCATTGACAGAAGAAAAATCTTGC
CCAGAATTATTTATTTGAGTGGGTGGCATTGAGTGGGAATTGGGTCCAGAGCGAATACGCTTTG
AGGCCATCTCAAAATTATGTGTTGGTTCTTCATTATCCTGAGGCATAGATCTTTTCTTTGTGAC
ATCCCCTAAAACATATGCTTGGCTTGATGCTTGATCATCCTGAAAACACATTATATTTACCATG
AGAAACTCATAAAAGGCTACCAGGCACTAACTTTTATCACTGAAACTTATTATTTTTGTTACCT
GCTAAAAAATATATTTTAAAATAAAAATATTACCCTGACAGACTGAATTTCCCTTGAAGCCCGC
TCACTATTTTTTATCATCTTCTCAACCTGTCTGATGACTTGATCAGCAGCATCCCCTGCGTTCA
TTCCTCGTAGAGCTCTAAGCAATCTGTCCCTAGACTGGTCAGCCAAAATAATACCCAACTTGTC
AGGTACAAGAGCACTGAATAGCCCCCAAAAGTCATAATTACAGACCATACAGGCTGAAGTTTCA
TTTCAATATTTAACAAACCAGGAGTTCTCAACAAAGCATTTGTGATACATATATCCATTAACCT
TTTGGCCTTTGAATAATAATTCCACCAAGATAGCAATAAGTCATTTAGGGAGAGGATAATAAAG
AGGTAATTATAAAATCTAAGGTATTAGAAGGCACTGATATTCAGCAGCCAACTGATTTGTATAC
ATATTAGATAAAAAAAAATCATTTACTTCAGTAATTGGCATCTGAATTATCCAAAAATTATTAT
TATAATAATAATAATAAAGAAGTTACCTCTACAATAGCTGGATTAGTACACCTCAGGAATCCCA
AAAATGCAGTTCTTAAGGAGTATTGAATACTAGCTTTATGGCATTCCCTCACCGTGTCAAAGTT
TGGATTAAAATCGAGTAGTGCAGAAAGAACAGTGCCATAGTGGAGGGGTCTCCTTCTTGCTATG
GCAGCAAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.09860578
Functional Information
Coding potential Y
Potential coding position 23239825-23240342(-)
23238324-23240342(-)
23240397-23238303(+)
Potential amino acid sequence MNAGDAADQVIRQVEKMIKNSERASREIQSVRDDQASSQAYVLGDVTKKRSMPQDNEEPTHNFE
MASKRIRSGPNSHSMPPTQINNSGQDFSSVNGGSPSFPLSDDNLTPVEQMIAMIGALLAEGERG
AESLEILISKIHPDLLADIVITNMRHLPKSPPLTKVGTLPTIQQAVHVNSRAQVLPPPASTNSL
HTPVSTPQLPFTSAATISSSISDTAAVNNFAADSKRDPRRDPRRLDPRRAAVSVGMSCSPVLEG
TGAAMPDFDCSISNKPLSVPAVENPSLRPMSNIQSNDNTIEGPSITSVEQPAPEGDVVGGAEDI
VHILEVKTSSNHAVSPYVVDVDSTEMKADAEIKHETEESSFPESDQNFQASITVSSLDETGRDL
PVPPLYVELTEELERSVIKSAVQQIAESYLHLHWSDCNEMRMALLARLVGQIDADDDIVVMLGK
QIVVDYRQQKSCCHSKKETPPLWHCSFCTTRF*(-)
MKCAWRYLPGLLVRLMLMMTLLSCWENKLLWITDNKSLAAIARRRPLHYGTVLSALLDFNPNFD
TVRECHKASIQYSLRTAFLGFLRCTNPAIVESRDRLLRALRGMNAGDAADQVIRQVEKMIKNSE
RASREIQSVRDDQASSQAYVLGDVTKKRSMPQDNEEPTHNFEMASKRIRSGPNSHSMPPTQINN
SGQDFSSVNGGSPSFPLSDDNLTPVEQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVIT
NMRHLPKSPPLTKVGTLPTIQQAVHVNSRAQVLPPPASTNSLHTPVSTPQLPFTSAATISSSIS
DTAAVNNFAADSKRDPRRDPRRLDPRRAAVSVGMSCSPVLEGTGAAMPDFDCSISNKPLSVPAV
ENPSLRPMSNIQSNDNTIEGPSITSVEQPAPEGDVVGGAEDIVHILEVKTSSNHAVSPYVVDVD
STEMKADAEIKHETEESSFPESDQNFQASITVSSLDETGRDLPVPPLYVELTEELERSVIKSAV
QQIAESYLHLHWSDCNEMRMALLARLVGQIDADDDIVVMLGKQIVVDYRQQKSCCHSKKETPPL
WHCSFCTTRF*(-)
MAARLLLSVIHNNLFSQHDNNVIISINLTNKPGK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b