Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.002G137700_circ_g.1 |
| ID in PlantcircBase | gra_circ_000155 |
| Alias | Chr02:23236688|23240408 |
| Organism | Gossypium raimondii |
| Position | chrChr02: 23236688-23240408 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.002G137700 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Gorai.002G137700.2:5 Gorai.002G137700.1:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.09860578 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
23239825-23240342(-) 23238324-23240342(-) 23240397-23238303(+) |
| Potential amino acid sequence |
MNAGDAADQVIRQVEKMIKNSERASREIQSVRDDQASSQAYVLGDVTKKRSMPQDNEEPTHNFE MASKRIRSGPNSHSMPPTQINNSGQDFSSVNGGSPSFPLSDDNLTPVEQMIAMIGALLAEGERG AESLEILISKIHPDLLADIVITNMRHLPKSPPLTKVGTLPTIQQAVHVNSRAQVLPPPASTNSL HTPVSTPQLPFTSAATISSSISDTAAVNNFAADSKRDPRRDPRRLDPRRAAVSVGMSCSPVLEG TGAAMPDFDCSISNKPLSVPAVENPSLRPMSNIQSNDNTIEGPSITSVEQPAPEGDVVGGAEDI VHILEVKTSSNHAVSPYVVDVDSTEMKADAEIKHETEESSFPESDQNFQASITVSSLDETGRDL PVPPLYVELTEELERSVIKSAVQQIAESYLHLHWSDCNEMRMALLARLVGQIDADDDIVVMLGK QIVVDYRQQKSCCHSKKETPPLWHCSFCTTRF*(-) MKCAWRYLPGLLVRLMLMMTLLSCWENKLLWITDNKSLAAIARRRPLHYGTVLSALLDFNPNFD TVRECHKASIQYSLRTAFLGFLRCTNPAIVESRDRLLRALRGMNAGDAADQVIRQVEKMIKNSE RASREIQSVRDDQASSQAYVLGDVTKKRSMPQDNEEPTHNFEMASKRIRSGPNSHSMPPTQINN SGQDFSSVNGGSPSFPLSDDNLTPVEQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVIT NMRHLPKSPPLTKVGTLPTIQQAVHVNSRAQVLPPPASTNSLHTPVSTPQLPFTSAATISSSIS DTAAVNNFAADSKRDPRRDPRRLDPRRAAVSVGMSCSPVLEGTGAAMPDFDCSISNKPLSVPAV ENPSLRPMSNIQSNDNTIEGPSITSVEQPAPEGDVVGGAEDIVHILEVKTSSNHAVSPYVVDVD STEMKADAEIKHETEESSFPESDQNFQASITVSSLDETGRDLPVPPLYVELTEELERSVIKSAV QQIAESYLHLHWSDCNEMRMALLARLVGQIDADDDIVVMLGKQIVVDYRQQKSCCHSKKETPPL WHCSFCTTRF*(-) MAARLLLSVIHNNLFSQHDNNVIISINLTNKPGK*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |