Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os06g0728600_circ_g.4 |
ID in PlantcircBase | osa_circ_032484 |
Alias | Os_ciR10670 |
Organism | Oryza sativa |
Position | chr6: 31018151-31019853 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os06g0728600 |
Parent gene annotation |
EPS15 homology (EH) domain containing protein. (Os06t0728600-00) |
Parent gene strand | + |
Alternative splicing | Os06g0728600_circ_g.5 Os06g0728600_circ_g.6 Os06g0728600_circ_g.7 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0728600-00:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.15073945 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
31018203-31018717(+) 31019707-31018164(+) |
Potential amino acid sequence |
MSADKREVQSLAAKYDERCKKVGDVASKLSMDEATFREIQEKKLEIYNAIVKLQKGDGNDEKLQ ERANQIQSDLEELVKSLNEQCKRYGLRAKPTTLVELPFGWQPGIQETAAVWDEEWDKFGDDGFS TIKELTVEMEPPVVQKDQPTVEDSKVSTNGPSAPTSTEKEDSRGDKSAAASEQTVEPDATPSDS KTVAAKSPPVSPVKNTKDGHSDERDKKQSGTNDTSSRAIESVRFFTKVGAITGLMKFQKGCLLI NVRFNPLQRNMMRDVRRLEM*(+) MQLLPIAKRLQQKVLQLVLLRTQRMAIVMNVIKNNLGQTTPRHVQLRVSDSLQK*(+) |
Sponge-miRNAs | osa-miR5080 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015 |