Detail information of Os06g0728600_circ_g.4


General Information
CircRNA Name Os06g0728600_circ_g.4
ID in PlantcircBase osa_circ_032484
Alias Os_ciR10670
Organism Oryza sativa
Position chr6: 31018151-31019853  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0728600
Parent gene annotation EPS15 homology (EH) domain containing protein. (Os06t0728600-00)
Parent gene strand +
Alternative splicing Os06g0728600_circ_g.5 Os06g0728600_circ_g.6 Os06g0728600_circ_g.7
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0728600-00:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGTCCTGTTAAGAACACAAAGGATGGCCATAGTGATGAACGTGATAAAAAACAATCTGGGAC
AAACGACACCTCGTCACGTGCAATTGAGAGTGTCAGattctttacaaaagtaggtgcgataaca
ggtttaatgaagtttcagaaaggatgtctgctgataaacgtgaggtactgttctcctgtaactt
ttgattaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCTTTACAAAAGTAGGTGCGATAACAGGTTTAATGAAGTTTCAGAAAGGATGTCTGCTGATA
AACGTGAGGTACTGTTCTCCTGTAACTTTTGATTAAGAAAATGAGCTCCATGCATACAAGTTTT
AATGTGCAGACGGAGGCAAAAGAGACATGAAAATTCATATCTCTGGTCTCGGTCCTCTCATACA
TTGAACTGTTTACATTGTTTTACATCATGAGATATTGTTCTGTATGCATCTGTAAAAACCTCCC
ATTGTTGCATGCTCTTCGATTAACTGCCGGTCATAGATCTTGCAATGTGCAACTTGTCGTTTCT
ATAGAATTATATGTTGCTTGAGTTGAAGCCAGAATGATTGTTTTGTGCACTCTTAATTTGTGTG
AATTGCAATTCAAGCATTCAACTATGCCATCTGATGTATCTTGTTGCATCATGATGTGTATTGC
AACAATGGGCACTCTTTATATATGGTATTTTACTTGATCTCACAGTCTCTGCGAATTCCATGTT
CAGGTTCAATCCCTTGCAGCGAAATATGATGAGAGATGTAAGAAGGTTGGAGATGTAGCATCAA
AGTTATCGATGGATGAGGCCACTTTCCGTGAGATTCAGGTACACCAGTGATATTTATGGCATTA
TCTCAGCCAGTAGAAAATTGTTAAAAAAAAGATTCATGAGATATGGACTGTGTGAGTCTGACAT
TATTTTTTCTGCTATCTACAGGAGAAGAAATTGGAGATTTATAATGCGATAGTTAAACTGCAGA
AAGGGGATGGAAATGATGAAAAGCTTCAGGTGTTTTTTTTAGGTTCTTCCAGTACCTTCCATTT
CATCATACTATACAACTGTTGTTTGACCATCTTTTTGTTCGTTTTATAGGAGCGAGCTAACCAG
ATACAATCTGATCTTGAGGAGCTTGTTAAATCTTTGAATGAACAGTGCAAGAGATATGGGTTGA
GAGCTAAGCCAACTACTCTTGTGGAGCTTCCTTTTGGTATTTGCTACCATCCTGTTTGTCTATA
TATTTCTATCCAACATATTCTTGTATTCTTACTTTAGTTTGCCAGGTAAACTAAGCCAAAACGC
ATTTTAGTTCACTGCTATTAACTTCATTTGCTCCTTGTTATTAATGAGGATCCCGCTCTTCTTT
TTATATTGCTTGGCATGGTAATGGTAGGTTAACTTTACTATCATATTTTTTAGGTTGGCAACCT
GGAATACAAGAGACAGCAGCTGTATGGGATGAAGAATGGGACAAATTTGGTGATGATGGTATAC
TAACTTGAATCTTGATTCTGTTACCAGCTATGCTATTAAATTTGTTCTTATATAACATTTCTGA
ATTCTACTGTTGTACACCACCTGTTCACCAGGCTTCTCCACAATAAAGGAACTCACAGTTGAAA
TGGAGCCACCTGTTGTACAAAAGGATCAGCCTACCGTTGAAGACAGTAAAGTGTCTACCAATGG
GCCATCAGCACCTACATCAACAGAGAAAGAAGATAGCAGGGGTGATAAATCTGCCGCTGCCTCT
GAGCAAACTGTAGAACCTGATGCAACTCCTTCCGATAGCAAAACGGTTGCAGCAAAAAGTCCTC
CAGTTAGTCCTGTTAAGAACACAAAGGATGGCCATAGTGATGAACGTGATAAAAAACAATCTGG
GACAAACGACACCTCGTCACGTGCAATTGAGAGTGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.15073945
Functional Information
Coding potential Y
Potential coding position 31018203-31018717(+)
31019707-31018164(+)
Potential amino acid sequence MSADKREVQSLAAKYDERCKKVGDVASKLSMDEATFREIQEKKLEIYNAIVKLQKGDGNDEKLQ
ERANQIQSDLEELVKSLNEQCKRYGLRAKPTTLVELPFGWQPGIQETAAVWDEEWDKFGDDGFS
TIKELTVEMEPPVVQKDQPTVEDSKVSTNGPSAPTSTEKEDSRGDKSAAASEQTVEPDATPSDS
KTVAAKSPPVSPVKNTKDGHSDERDKKQSGTNDTSSRAIESVRFFTKVGAITGLMKFQKGCLLI
NVRFNPLQRNMMRDVRRLEM*(+)
MQLLPIAKRLQQKVLQLVLLRTQRMAIVMNVIKNNLGQTTPRHVQLRVSDSLQK*(+)
Sponge-miRNAs osa-miR5080
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015