Detail information of Os12g0291100_circ_ag.17


General Information
CircRNA Name Os12g0291100_circ_ag.17
ID in PlantcircBase osa_circ_011199
Alias NA
Organism Oryza sativa
Position chr12: 11263149-11267780  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0291066_circ_g.1 Os12g0291066_circ_g.2 Os12g0291100_circ_ag.1 Os12g0291100_circ_ag.2 Os12g0291066_circ_g.3 Os12g0291066_circ_g.4 Os12g0291066_circ_g.5 Os12g0291066_circ_g.6 Os12g0291066_circ_g.7 Os12g0291100_circ_g.1 Os12g0291100_circ_g.2 Os12g0291100_circ_g.3 Os12g0291100_circ_g.4 Os12g0291100_circ_g.5 Os12g0291100_circ_g.6 Os12g0291100_circ_g.7 Os12g0291100_circ_g.8 Os12g0291100_circ_g.9 Os12g0291100_circ_g.10 Os12g0291100_circ_g.11 Os12g0291100_circ_g.12 Os12g0291100_circ_g.13 Os12g0291100_circ_g.14 Os12g0291100_circ_g.15 Os12g0291100_circ_g.16 Os12g0291100_circ_igg.1 Os12g0291100_circ_ag.2 Os12g0291100_circ_ag.3 Os12g0291100_circ_ag.4 Os12g0291100_circ_ag.5 Os12g0291100_circ_ag.6 Os12g0291100_circ_ag.7 Os12g0291100_circ_ag.8 Os12g0291100_circ_ag.9 Os12g0291100_circ_ag.10 Os12g0291100_circ_ag.11 Os12g0291100_circ_ag.12 Os12g0291100_circ_g.13
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGGTCTCCTGGGTACTATGATGGCAGGTACTGGACCATATGGAAACTGCCCATGTTCGGCTGC
AGCGACAACAGCCAGGTGATCAAGGAGCTCGAGGAGgtgctcaaggagctcgaggaggccaaga
aggcctaccccgatgcctttgtccgtatcatcggcttcgacaacgtcaggcaggtgcagttgat
tagcttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCT
TCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGA
GTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTA
TGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTT
TACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCC
CTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAA
ACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACA
ATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAATGTTTGT
TTCTATGTTTAACCGAATGTATTGTGAATATAGGATCTGACATAATTATTTGTGTAAGTTAATT
AGTAAACGAATGTATTTCTTTTTGAGAGAACAATGATTTGATCTTTTGTGCAACGGCTGATAAG
TCCTTAAAAAAATGAATAAATCAAACAACAATAATTTATCTCAGCACAGTACATCTCAGTTCAC
CTGACTGAGCACGTTAGCAACGAGCACAGCATATTTTTCATATTTTGCTTGGGAAAACAAACAA
AAGTTAGCAATCAACGACACACGGCCAGGTTGGATGGATCGCCCGTCTCGTCCCCGTGGTCCAG
AGGATAAGGCTGATAGCCATGCCAGCCTGCCCGCCCGCATCTTCACCGGCGAGCCGCAGCCACT
CCTCCCCAATCCTGTCGGTAACCATCCAAAGCGGGAAATTTAACTATTTGCCACTCTTATGACA
TGGTAATTAACGATTTGCCACGTTCTGTCAATAACACGTGGGCCCTCATGTGTCTATGACATGT
AGGTCTAGTGACAAATCGTTAAGCACTATTCGTAAGAGTGGCAAATAGTTAAAAGCTCCATCCA
AAGCAACGGGCATGGCTTACATTTCTAATCATTTGAGAGGGTGTTTCCTTGTGTATCTTTTTCT
AAATTCAATACAAATAGTTACTTCTTTAAAATATTAAAAATATAGAGTATAGTGATATACAACA
CTCTAAAAAAAACATCAAGTTTAAATACAACGTACACATTGAGAATCAAAAGAAACGGAAGTCG
AATGTAAATAGTACTCTTTTTTATATATCAACTATGAATTGAATTTGGATATAAATATAAATGT
TATTAAATTGTTTGAGAATTTTTCTATAACTATTTGAATGATTTTTAGAAAAAAAATTCCTCAA
GCAATGCTTGAGTTTAAGATGGGGGTATTCACTTAACCTTTACAAACCTCATGTCCCTAGCTAG
TAGTGTTTAGTGGGAAAAAGTTAGGGTATTTAAGATAGTTGGTTAATAGATTAGAAGTGGTGTG
AGATAGGAGTAAAAAGAAGTGGATTTATCTCTATTATTATAAAAATTGAAGATGTTTTTGTCGA
TACGTTGGTACGTTATCCGTGCATGAGTCGATTTTTAATTTTGTTCGCTTTTGGAAATACATAT
CCGCATTTGAGTCACTTCGCTCACTTTTAGAAATACATAAGGACTCGTATAAGATATCTATTTA
AAAAAACCCGCATGCTAACTTGAGATGATTAGACTCCTAATGTAGCTCATGATTATATATATAT
ATATATATATATATATGTGTGTGTGTGTGTGTCCAAGCCAATTATCACAGTGAATTTCATCTTA
ACTAAACCATATAACAACAATAAGATTAAAATAACCTTCGCCTGTTGTGAGGCACGGACATTTT
TTTCATGTTGAGAAAAACGATCGAGAGTGACGTATTAGATGTAGTTAAATATATACATATGAGA
TATATCTATATATATTAACTTTATTTCATATTTTTTTTGGGTTTTCCGGAAATGCTCAGGATCG
ATCCCATTGGGTCTGCCCCTGCCCTTTGAGATCGAAACAGTTCCATAGTTGGCGTTATATAAGG
TGCTGGAGCCTCAAATTGAGACATGCAATCATCCTCTCTTTATTTCTACTGCTAAGCACATAAC
TACTCTAGTACTAATAAGCTAGCTAACTAAGGGTCTGTTAAGATTGATGCCAAGAGACATGCAA
TCATCCTCTCTTTATTTCTACTGCTAAGCACATAACTACTCTAGTACTAATAAGCTAGCTAACT
AAGGGCCTGTTCAGATTGATGCCAAAATAAGCCTTACCAAAATTTATCAATGCCAAAATTTTGA
TAAATTGACAATATTACCAAAATTTTAGTAAGATTGGCTTAATAATGTTGCCAAAATTATATAA
ACATTACTAATATTTAGTAACAAACTAAACGCAGTCACATAATTATTAATTTTACCAAATAATG
ATATGGTTGAAAATGTCATCAATCTAAAAGGCCCTAGCTACGTAACTATGGCTCCCATTGTCAT
AGCCTCCTTGGCCACCTCCGTGGCTCCATTCCAGGGGCTCAAGTCCACCGCCGGCCTCCCAGTG
AGCCGCCGCTCCACCAACTCAGGCTTCGGCGACATCACCAACGGCGGAAGGATCAAGTGCATGC
AGGTACCATACGTCCTCAGCTTCTTCTTCAAAGTGATCGTGTAGGATCGAATACAGAGAAGCCT
ATTAAAGGTAGTGTAAATCTCTATCTTTGTTTAGCTTTTCGGTGACATGCAAAACGTGATAAAC
TATTAGCATATAAATAATTAAGTATTAATTATTATAAACTTAAAATAAAGTTTATTTGATTCTT
TCAAGAAACTACTATATAAAAATTATTTTTGCAAAAAAAAAACAAACCATTTAACCATTTGAAA
AACATACTAACAGAAAATAAAAAAAAGTTGAAGTTTGGAGTTGAAAAAAAAAGAAACGGCTAAA
AGGGATGAATGTTAGATAAAATCAAAGAAAGTCAGACAGTCAAAAGTTTGAAAAACAAAAACTA
ACCCAACCTAAAAATCCTAAAGAACATTTCTGGCGGTCTGAGCGGACCCATCGTACTAAAAACA
TAGTTATGTAAAAACATGTTTTCTCTAAAACTAGCTATTGGATTAAAGCCAAAACTTGTTATAA
TAAAGTAGACAAACCATAGAACAACTCCACTGGGTGAATTTGCAAACCAATCAATGTTTAAGAG
AAAACATCCTCAAAATGTCTGTTGCCTCAAATTTTACCAAATCTAAACATAGCCTAAAATTTAA
GAAAATTTGAAACCTTCCATATCTGATCTATGAAGTATTAGAAATGTTATTAACTTAAACAAAA
TTGCCGAAAAATGAAGAATCACAAATTAATGACAAGACGAAACAAAATGTAAAACCTACACAAC
CGAAAAAGATCATCGACGCCTTGATGATTGAATATGATCTTTATTGTCAAGCATTGTCCATAAG
GTGTAGCCACAACACCTCTCACAAAATCTCTCAAAACCCTAACACAATGAGCCCTAATATCTCG
AATGTCTCAATTGTCTTTACCCTCAAGGCATATCCTCACTCTCTATTTGTACCCATGGATGTGG
TTGTTCATAGCCACGAGCTCAACTAAAAATAGGAATCATAATAACATAGGAAACCCCTCAAATT
AAGGTTACACTCATCCTTTTACAAATACGGACTCAATTACAACTCAAACTTGGACACCTTCCAA
ACTTGACCCCTTTCCATACACATACATATCCTCATGTATCCTGCATGATCTCCTTTCGCTTGAG
CATCCTACATAATCTCCTAGATTGTCTAGACCTCAACGTTTCCCAAGTTTACTCCCGATTCATC
AGTGGGAATACTCCCGTTGTTTTAAGCAACACCTACATATAGACAATCAAGAAACTATATCCAA
GTACAAGTTCTTTCCAACTTAACTCACATTAACATAAATGTAGTTCATAATACACACATGAAAC
ATCTAGAAGTCATAAACATTAAGCACCAAATGCAAAACTCAATTTTACCCCGAAACCGACTCCA
ACCAAGAATACCCTGGACCACCTTTAGCATTCCTCCAGTCGGTCCACCATGTACTAGCTTGACC
ATCAAGGTCGGTCCTCCATGTATAGGTCGGAACATCTAGCCTTGTCCAGAACGCTTCGCTAATT
TAAACACTTCACCAAAGTCAATTCAAACACTTGTACAACTAGTTGTTCATCCTAAAACCTTAAA
TCAGCACAATGATTACACGGATCAATCAAACTAACTGATGTTCAAAAGTTCAGAGTGACCTGAT
TCAATTGTTTCCATTTGTTTAGGTGTGGCCGGTTGATGGCAAGAAGAAGTTCGAGACATTGTCG
TACCTACCGTTGCTCACCGCGGAAGACCTCCTAAAGCAAATCGAGCACCTGCTCTAGTCTGAGT
GGGTGCCTTGCCTCGAGTTTAGTGATGTAGGGTTCATCTATTGTGGGAACCATAGGTCTCCTGG
GTACTATGATGGCAGGTACTGGACCATATGGAAACTGCCCATGTTCGGCTGCAGCGACAACAGC
CAGGTGATCAAGGAGCTCGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.100920456
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017