Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d022436_circ_g.1 |
| ID in PlantcircBase | zma_circ_009505 |
| Alias | zma_circ_0002679 |
| Organism | Zea mays |
| Position | chr7: 177673611-177677198 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d022436 |
| Parent gene annotation |
zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding |
| Parent gene strand | + |
| Alternative splicing | Zm00001d022436_circ_g.2 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d022436_T008:5 Zm00001d022436_T025:5 Zm00001d022436_T010:5 Zm00001d022436_T012:5 Zm00001d022436_T016:5 Zm00001d022436_T026:3 Zm00001d022436_T003:5 Zm00001d022436_T023:5 Zm00001d022436_T022:5 Zm00001d022436_T004:5 Zm00001d022436_T019:5 Zm00001d022436_T009:5 Zm00001d022436_T007:5 Zm00001d022436_T021:5 Zm00001d022436_T005:5 Zm00001d022436_T018:5 Zm00001d022436_T002:5 Zm00001d022436_T017:5 Zm00001d022436_T001:5 Zm00001d022436_T013:5 Zm00001d022436_T015:6 Zm00001d022436_T020:5 Zm00001d022436_T024:5 Zm00001d022436_T006:5 Zm00001d022436_T011:5 Zm00001d022436_T014:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.124896351 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
177677060-177673610(+) |
| Potential amino acid sequence |
MLNTVGVSQEPRYNASLMISLGFYVFLGQTHLTHIDGGWTLLEIHMSNAGQLERDLPDLIPQLR PYQLRAAHWMVQRENGNTLHQEYANSAPYCVPFDFVHKNSRMFYNPFNGNISSQPEPSPPYISG GILADEMGLGKTVELLACIFAHRRPISLDFSVFQNKTEMDQIKRQKVERVECICGAASESSAYT GLWVQCDICDAWQHADCVGYSPKRNILFADTTEDVVSTNKKSTMKSGFRRKKKPRCSIVETEDK YICALCLELIEATQTNILSHATLIVCPAPILAQWHSEITRHTRPGSLKVCIYEGARNLDPSTIQ KNDMTEIITADVVLTTYDVLKEDLSHDFDRHDGDRRFLRFQKRYPVIPTVLTRIHWWRLCLDEA QMVESGRTSVTEMALRLNAQHRWCITGTPIQRKLDDLFGLLRFLRTNPFDTYRWWVDIIRDPYE *(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |