Detail information of Zm00001d022436_circ_g.1


General Information
CircRNA Name Zm00001d022436_circ_g.1
ID in PlantcircBase zma_circ_009505
Alias zma_circ_0002679
Organism Zea mays
Position chr7: 177673611-177677198  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d022436
Parent gene annotation zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid
binding
Parent gene strand +
Alternative splicing Zm00001d022436_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d022436_T008:5
Zm00001d022436_T025:5
Zm00001d022436_T010:5
Zm00001d022436_T012:5
Zm00001d022436_T016:5
Zm00001d022436_T026:3
Zm00001d022436_T003:5
Zm00001d022436_T023:5
Zm00001d022436_T022:5
Zm00001d022436_T004:5
Zm00001d022436_T019:5
Zm00001d022436_T009:5
Zm00001d022436_T007:5
Zm00001d022436_T021:5
Zm00001d022436_T005:5
Zm00001d022436_T018:5
Zm00001d022436_T002:5
Zm00001d022436_T017:5
Zm00001d022436_T001:5
Zm00001d022436_T013:5
Zm00001d022436_T015:6
Zm00001d022436_T020:5
Zm00001d022436_T024:5
Zm00001d022436_T006:5
Zm00001d022436_T011:5
Zm00001d022436_T014:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGCAAGCTTGATGATCTCTTTGGGCTTCTACGTTTTCTTAGGACAAACCCATTTGACACATAT
AGATGGTGGGTGGACATTATTAGAGATCCATATGAGtaatgcaggacagttggaaagggacctt
cctgatttaattcctcagctcagaccatatcaacttcgcgcagcgcattggatggttcaacgtg
aaaacgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAATGCAGGACAGTTGGAAAGGGACCTTCCTGATTTAATTCCTCAGCTCAGACCATATCAACTT
CGCGCAGCGCATTGGATGGTTCAACGTGAAAACGGAAATACGCTCCATCAAGAATACGCTAATT
CTGCACCATATTGTGTTCCTTTTGATTTTGTTCACAAGAATTCCAGGATGTTCTACAATCCGTT
CAAGTAAGTCTGAAGCGCGTAAACACTAACCAAATATGGTTGATATGCCTGTAGCTTGTTTGGT
TAAGTATGCTTGAATTTCTGAAGTTCATTGCATATTGTTGTACTATTTGAACAACCTGTTTCCA
TGCACATAATGTTTCCGACAGTCTTGATTTCTTTCTTTTTTTGTTCTCGTGAATGCCTCTGATA
TTCACATATCTGTTACTAACTTACTACGCAGCGGAAATATTTCATCGCAACCAGAGCCTTCTCC
ACCTTACATCTCTGGGGGCATTTTGGCTGGTAAGTTGACAACAATTGTGTTCACTGTTTAATTG
TTATACTGCCTTTATGGTTCTTACTATTGTGGGTAGTTACCGTTGCCACTCCTGTGTTCAATTG
ATACAGATGAAATGGGCTTGGGGAAAACTGTCGAGCTTTTAGCGTGCATTTTTGCTCATCGTAG
ACCAATTTCATTAGACTTTTCTGTCTTCCAGAACAAAACCGAAATGGATCAAATTAAGAGGCAG
AAAGTAGAAAGGGTTGAGTGCATCTGTGGTGCTGCGAGTGAAAGTTCTGCATACACGGGTCTAT
GGGTCCAATGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTACTCACCCAAGAG
GAATATACTTTTTGCTGATACCACTGAAGATGTAGTATCAACAAACAAAAAAAGCACCATGAAG
TCTGGATTTAGAAGGAAAAAGAAACCCAGGTGTTCTATTGTTGAGACAGAAGACAAATACATTT
GTGCACTGTGCTTGGAGCTTATTGAAGCAACTCAAACTAATATACTCAGCCATGCTACATTGAT
AGTATGTCCCGCACCAATATTGGCACAATGGCACTCTGAAATTACCCGGTATGACCTCTATCCA
AATGCTAATTTTACAATTTTGCACATAATTTCTGAATATCAGAATCAACATTTTTCAACTTTTC
CAAGCTACACTTCACTATATCGAGAGCTTGAGACATACTGTGTAACACCATGGTCTGCTTCGTC
TAAATGCTGTTTAACCATTTAAGCACCATTCATGTGCTACATGGTGGACAGACATGTTTGTTTA
ATCAGCGTTTGAATGGCTGCAACTGTTTAGCATTTAACATTTGGGTGAACATTGTCCGCTGTTG
CTCTCAGTTTTGAAATCTCTGTCTTTTGTTTAGAATGTAAGGTTGTTATTCTGCTCTCATTGTT
TCAGCCACGTAACACTCAATCTCTTGACCACTTCTACTTTGAGTACTGTAGAAGTTGCAACTTT
ATGTTAAAAATCCTTTTGATGGATCTTTATTAAGGCCTTAAGGGTGCCCATGATGGGAAGATTT
TGAGAAAAGACATGTCTACTCTAGTGGAGTCTATACCAAGAATGAAGCTTCCAAGTGCCTTATC
CACTTTTATTCATTTTAATTTTTCTCCTCTTGATATGGTACAGCTACAGTTATATTCATAAAAT
GATAGTGCTGATGGCTGTTTTTCTTTACTCTAGACACACAAGGCCAGGATCTCTGAAAGTTTGC
ATTTATGAAGGTGCAAGGAACTTGGATCCTTCTACCATCCAAAAAAATGATATGACTGAAATAA
TTACTGCTGATGTTGTCTTGACAACATATGATGTCTTGAAAGAAGATCTATCACATGATTTTGA
TCGTCATGATGGCGATCGCCGTTTCTTGAGATTTCAAAAGAGGCAAGTCATGTTTAGTTTTCAC
TTTTCACAACGAAGGTTAACATGATAGGTTAGACTGATTCTAGTATTTCAAAATTCAAACCCTC
CATAAACTATAGGAAACATATATTTCCTCAGAACCACGAAGTCATGGATTTTTTCCATGTTGGC
GAATGCAGGGGGGTTGGGGGTTTTCAGTGTTGCTATTTGACAAGGAAAGCTAATTATAAACAAT
AGCTGTAAGTAGCAGAATTATAGCGAAAGGGCATCTAGCGTAATGGTTAAGGCTTTCGAGTAGC
ACCTCTAGGTCCCGGGTTCGATCGCCCTCGGGGGTGAATTTCGGGCTTGGTTAAAAAAATCCCT
CGCTGTGCCCCGCCCGCTTCCGGCTGGGCCGTTGCAGAGTGGGCACTTGACTTGGCCCGTTAGT
GATGGAGGGGGGAGGCAGGGTTCAGGGGTTTTCTGGGTCGGGAGTCTGGGACTATGTTTCGGTC
TCTTCTAAATATAATACCACCGGGAGGGCGGTCTTTCCCTCCCTGGCCGAGTTTTTTAAGTAGC
AGAGTTGTATGACCCATATACTTGCTGCTGCCTTGCAAGGGTATCAATGAACTGAAACTGTTCC
AAACTATTGTTGTTATTTGGAAAATATAACCCTAGGAAGATCTCCTCCCTAAATTTTAGGAAAA
GGTTGTTAGAATACAAAAGGTTTAATTATTCAGGCCTGCACACCTTGTTCTGTACAGATAGAGA
TGTATTCTAATTATAGATAGAGTTGTAACCGAACGAGATTAGATATAGAGTCCTAATCGGTAAC
CACTATTGTAACTATGTTAGACTCTAACTTGTTGGCAGTTTTCTGCCCATATAAATATACATCA
CGCGGTCTCCTCTGGAGCATATACGCTTAACCAATCTAGTGGTTTTCTCTCAAAGGTAATTGCA
TGATTCGTCCTTATGTTTTTGTGTATAAATAGCTATATAACATGTTCTTGCTAGCATGTGCACA
ATAACTTGCTTCAATTAAAGCAAAATTAATGATGGAGCTAAACCTACTACTGAGGGGTCACATC
CATTTTTTTCTTGGCAAAGTCAAACACAAGCTGACATACCGCACCAAATCAGAGATTTGTGGCA
CTGTACCTTTGTGCTTTCCTTTTTTTGTTGTGTTGGGTTCATGCTTCACATTTGAATTACAATA
TTTATTGAACTGACATTGGGTGAGTACTAAAAATCTGTTGAAACTGAAAGGATAACTAACTCGA
GTTTATTCATCACTTAGAATCATGGTACACTGACTATACCTGAAATAGAAGTGAAGTAGCTTGT
TCGGTCCAAGTACTTCATTGAGTTCTTACAGTAAGAATCCCATTGTTATCCAGACATGCTATTT
ATTCATAAGTTAAATTATTTTTTGCTGAACCTCTGGCCATCTGCTGAACTGTCATTACGCTCTT
TTAGATATCCCGTCATTCCAACTGTCCTGACAAGGATCCACTGGTGGCGACTTTGTTTGGATGA
AGCTCAGATGGTAGAGTCAGGCAGGACTTCTGTGACTGAGATGGCATTGAGGCTAAATGCTCAA
CACCGTTGGTGTATCACAGGAACCCCGATACAACGCAAGCTTGATGATCTCTTTGGGCTTCTAC
GTTTTCTTAGGACAAACCCATTTGACACATATAGATGGTGGGTGGACATTATTAGAGATCCATA
TGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.124896351
Functional Information
Coding potential Y
Potential coding position 177677060-177673610(+)
Potential amino acid sequence MLNTVGVSQEPRYNASLMISLGFYVFLGQTHLTHIDGGWTLLEIHMSNAGQLERDLPDLIPQLR
PYQLRAAHWMVQRENGNTLHQEYANSAPYCVPFDFVHKNSRMFYNPFNGNISSQPEPSPPYISG
GILADEMGLGKTVELLACIFAHRRPISLDFSVFQNKTEMDQIKRQKVERVECICGAASESSAYT
GLWVQCDICDAWQHADCVGYSPKRNILFADTTEDVVSTNKKSTMKSGFRRKKKPRCSIVETEDK
YICALCLELIEATQTNILSHATLIVCPAPILAQWHSEITRHTRPGSLKVCIYEGARNLDPSTIQ
KNDMTEIITADVVLTTYDVLKEDLSHDFDRHDGDRRFLRFQKRYPVIPTVLTRIHWWRLCLDEA
QMVESGRTSVTEMALRLNAQHRWCITGTPIQRKLDDLFGLLRFLRTNPFDTYRWWVDIIRDPYE
*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b