Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022436_circ_g.1 |
ID in PlantcircBase | zma_circ_009505 |
Alias | zma_circ_0002679 |
Organism | Zea mays |
Position | chr7: 177673611-177677198 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d022436 |
Parent gene annotation |
zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding |
Parent gene strand | + |
Alternative splicing | Zm00001d022436_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d022436_T008:5 Zm00001d022436_T025:5 Zm00001d022436_T010:5 Zm00001d022436_T012:5 Zm00001d022436_T016:5 Zm00001d022436_T026:3 Zm00001d022436_T003:5 Zm00001d022436_T023:5 Zm00001d022436_T022:5 Zm00001d022436_T004:5 Zm00001d022436_T019:5 Zm00001d022436_T009:5 Zm00001d022436_T007:5 Zm00001d022436_T021:5 Zm00001d022436_T005:5 Zm00001d022436_T018:5 Zm00001d022436_T002:5 Zm00001d022436_T017:5 Zm00001d022436_T001:5 Zm00001d022436_T013:5 Zm00001d022436_T015:6 Zm00001d022436_T020:5 Zm00001d022436_T024:5 Zm00001d022436_T006:5 Zm00001d022436_T011:5 Zm00001d022436_T014:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.124896351 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
177677060-177673610(+) |
Potential amino acid sequence |
MLNTVGVSQEPRYNASLMISLGFYVFLGQTHLTHIDGGWTLLEIHMSNAGQLERDLPDLIPQLR PYQLRAAHWMVQRENGNTLHQEYANSAPYCVPFDFVHKNSRMFYNPFNGNISSQPEPSPPYISG GILADEMGLGKTVELLACIFAHRRPISLDFSVFQNKTEMDQIKRQKVERVECICGAASESSAYT GLWVQCDICDAWQHADCVGYSPKRNILFADTTEDVVSTNKKSTMKSGFRRKKKPRCSIVETEDK YICALCLELIEATQTNILSHATLIVCPAPILAQWHSEITRHTRPGSLKVCIYEGARNLDPSTIQ KNDMTEIITADVVLTTYDVLKEDLSHDFDRHDGDRRFLRFQKRYPVIPTVLTRIHWWRLCLDEA QMVESGRTSVTEMALRLNAQHRWCITGTPIQRKLDDLFGLLRFLRTNPFDTYRWWVDIIRDPYE *(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |