Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045747_circ_g.3 |
ID in PlantcircBase | zma_circ_009922 |
Alias | Zm09circ00029, zma_circ_0002940, GRMZM5G883025_C1 |
Organism | Zea mays |
Position | chr9: 36906444-36907044 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d045747 |
Parent gene annotation |
DNA topoisomerase type IA core |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045747_T002:3 Zm00001d045747_T003:2 Zm00001d045747_T001:3 Zm00001d045747_T004:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.19271391 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
36906454-36907041(+) 36906966-36906444(+) 36906766-36907014(-) |
Potential amino acid sequence |
MLEEKFGPILFPNVDTDNRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYIARSLSQQEDET EPTEECQKTFTPRLLGVMPDSDEKVERMLEEKFGPILFPNVDTDNRICPSCSEGTLRFKVSRYG EGYFIGCDRHPKCKYIARSLSQQEDETEPTEECQKTFTPRLLGVMPDSDEKVERMLEEKFGPIL FPNVDTDNRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYIARSLSQQEDETEPTEECQKTF TPRLLGVMPDSDEKVERMLEEKFGPILFPNVDTDNRICPSCSEGTLRFKVSRYGEGYFIGCDRH PKCKYIARSLSQQEDETEPTEECQKTFTPRLLGVMPDSDEK(+) MKPNPPKNVKKLLHPDYLVSCLILMKR*(+) MSITAYKIAFTIPTNFESQGSFRTTRANSIVCVNIREEDRTKFFFEHSLYLFIRIRHDTK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |