Detail information of BGIOSGA025282_circ_ag.1


General Information
CircRNA Name BGIOSGA025282_circ_ag.1
ID in PlantcircBase osi_circ_007066
Alias 7:4381128|4385996
Organism Oryza sativa ssp. indica
Position chr7: 4381128-4385996  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA025283_circ_igg.1 BGIOSGA025283_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAACAGGAAGAGGTTACTTCTGCTGGTGGTCAAATTGAACCACCTGGAATACACATGATCTAT
CTTCCATACTCGGATGATGTTAGATATCCTGAGGAGcaaaattgttaaattctctactcgtgaa
ttgtctgatgtgaagagggtttcaagtcatcatctacgccttttaggattcaagccactggact
accttaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAAATTGTTAAATTCTCTACTCGTGAATTGTCTGATGTGAAGAGGGTTTCAAGTCATCATCTA
CGCCTTTTAGGATTCAAGCCACTGGACTACCTTAAAGATTATCACAACTTAAGACCGTCAACAT
TTATTTACCCCAGTGATGAGGTAATAACATTACTTCATGTACTTCTTAACTTCAATCTTGAGGC
CCTCTTGGCACAGCTCTGGATCCAAGATTTCTTGGAGCTGGGTATTCCGAGCTCCACAAATCCA
TGGATCTGGATCTGTGATTACGTTGATAAACATTTGGATAAATCATCTTGTTCCCATTTAAAAT
TTTAAATCACTATAATTTAATACACAAACTTCAAATCTACCGTTTGAGTTACAGTTTGAAGTTA
TACTAGTACAATTATCTCCATCTTAATTTTTTTTGTCAAACACGCAGGAGAGCTGCGTAGTCTT
GACAATATTTTGTTATCTTGTTCGGTTGTTCCCTAGATTATTGTACTTCTCTAGCTTGAAGCAA
TAATATAATAGTTGAAAACCTTAATCATTTTATTTGATGATATTATTTTTCATAATAAAAGATC
TATTTGTGTTCGATACACATCCCTGCTGCATGCTACTTCCAAACTAAACTAAATCTGTCTGAAC
ATATTTAGGATTGTATTGTGGTGTATGCTTATTTCTTTCTCAGTCTTTACTTAAATCTAGGGTG
CATGTTAGGTTTACCTCCTTTTGTTTGATGCAGCAAATATTTGGAAGCACTCGTGTTTTCGTTG
CTTTACATAGCTCAATGCGGCGTCTTGGAAGGTTAAGTCGACTTATTATATTTCTGCCATAATT
TCTTTAATTTTGAAAGGGTTTAGAAACTGACATAGTTATAAATGGACATAATGTATGTCAAGTC
ATAAAATGTACTGTGGATTAAATTAATTAACATTACTGCTCATTTTTTGGGATAATTAGTGAGG
GGATGCAATTGAAAGGGGATGTTAGTTTTGTTGAAATATCACTCTATGCGATAGTTATCTCAAA
TTACAGCTCACTAGTAATACGCCCGTGCTAAATGCTACGGTCCAATTTTATTTGTCTTTAATAA
CTTTCAAAATGTCATGTTAGCCAAAAAATAAAAATAAATTATATGATCTGAGCTTTACGTGCAT
CAAACAATTTTCACACATAACACATCAGTCTCCTTTAGATGTAGATAACTCAAAATAAACACAT
AACACATTAGTTTCCTTTAAAAAGAATAGGCAATCGAAGAACCATATAATATAGATAGAATTCC
TTGATATGCCAAAGGACAAAATAGCTGAAAAAATATATGTTGGCTAGCTTATGAAATGCCACAA
AAACAGAAATCTAACTTTAGAATCAATTAAATAAAGTTTGCATATAGTTTGAGCCAGAAACATC
AAATAGTAATACTCCCGCAAATCCTAAGATATCATTTGAAAAGGATGTGCTCGAGTGAATAGTG
ATACAGGCCGCCCTCCGAACCTTCTAAATGAACTCAACAAAGCAAAATTACTTAGTGGTTTCAT
ATTTAACCATACAAATAGTTAAGCCAAGGCACTGTCATGTTCTAATATTCAGATTAGCATTCAA
GTGTCCATATAAGCCCTAACAATTCATTCCACTTATACTTAAATCCAACCCATTCAACTCACGT
TATACATTGGAAGGAGGAACTACATAGAGTAGAGCTCTCAGCGTTGGTGGGAGATTACACAGGA
AAGGATAAAGCTACCAACAAAATTCAGCAACCTTAGGGGATTACTGAAATGTGTCACTCTCGCC
ATCCTCCGGCATCCAAAATCTGCTCTGAAATCCTCTGAATTAGCTTCTAATAGTGATCTCCTCA
TGGAAAACCCACCTTTTAGGAGCAGAAAAGAGCTATCAAAGTGAAAAGAGTAGTAGTTATTATT
TCTGTCAAGTACAGATAACCAAGAACATATTTGTTAAAATTGTAAGTTTTATGACAGAACAGAA
ACATAAATAACTGAAAAGTTGGACTCTTGTGCATCTGTAAGATTTGAGTGAATAAACACTAAGG
ATGGACCATAGCAGCAACTTGCAAAGCACAGGCTTTTTTGGCTAGTTTATGCAAAGGTACTCAA
GTGTCCATAGAAGCCCTAATGATGCATTCCACTTATACTTAAAATGGAAAATGTCAACTAAACC
AAAACCATCGCCAATTAATGTAGTCCATTAATTATCCATGCTAATCCAGTTCTTCCATAATTAT
GCCTACTAACATAAGATGCCATAAGTAATTACAGGAGGCCTCCCATCTGGATGACAGAAGAGAT
AGATTGCTTTTAGCAAGAAAACTGAATAATATTTTTTAACACAAAAAATCGCAAGATACAATAA
ACCAGTCCAATCACTTAACCCAAATGAGAAAACTGTATGCCAGATGGATACCTTGTTGGTCTGG
CCACAATATAGAACACTCAAGAAATCTAGAACGCTAAAGATGTGCTCAATGAAATGCGTCTGTG
CTGCCAACTTCACGGTCGCACCAGAGCTGCTCCCCTACATGAAAAAAGGAACACAAAATAAAAA
AAGAATCAGAAAAAAGGAGGCCACAATTTCCTTCAGCGGATGCCAGCTTAGAACGAAAGAGGTT
CCACACTTTGTATCCAACCTTAGTTTCACTCTTGTTACGTGCATACACAAACAACATTGCCTTG
CACACTGCAATATAGAAATAATAGATGAAGTTCTAGAAATAGATGGATTTCGTTACTGCTTAAG
GCCTCAACGGACTTGGATTCGCCGGGGACCACGCTCCTTGCCCGCACTTCTTCAGATCTTGTTG
CAGAGAAGACTACCTCCTGACCTCTTCCACCACTCTCTCCGCATCCTGCATGAAGCAGAGTATC
ATGTATGATGGACAAGATGATAATGGTGAATAATATGGTTCTTATATGCTTACCATGTAAGATA
AATGGAGATGATGCGGGAGAGAGAGGACACTGGGAGCAAAGTGGTCACGGCGGATTGCGACCGG
CGCCCGGCGGGGCGTGGACGCGGCCGAGGAGAGCTTACCTTGTTGCCTAGATCGTGTCACCGCT
GTACGCCTCCCATTCGGCCTCCGCATCCTTGCCTCGCCGCTTACTACCGCCCGCCTGACCGAAG
AAAATCCCTCCTACATCTGCCGTTGTCGCGTCCTTGGTCCTATAACCGGACACCGCCTCTGCTG
GCGCAAGGGCAACGACGGCGCTAGTGTTGAGGGGGCGCCGGTGTGTGGAAGGGCTCGAGGGCGA
GGTGGCACACCGAATCCCCAGGAGGCAGATATATTAGCGGCAGCTCCAGTTAGCCACGGCCTAG
ATCAGCGATGCGAGCGGTGGTGACGGCGACGTGATTTGCGAAGTTCGGCGTGATTTTTGCGCAG
GGAGGGAGGGAGGGAGCGCGGTGGGGATGTAGAGAGCGGATCTGGGAGATGGAGAGAGGGTGGC
GGAGAGCCGGAGAGGGGTTGTGCTGGGTTCTGGCGGCGGAGCGAATCGTCGGCGGGGAGGGCTG
TGCGACGGCGATTTTGCGGAGGGAGGCGCGGGATGGGGGTGCGACGTGCGAGGGCGAGGCCGCG
AGGGCGGCGGCTGGCGATTTGGTGGAGGGCGAAGGGCGGTGTGCGAAAGAAAAGGGAAAGGAAA
CCGAGCGGTGATCCCGTGCGTGCGATTTTCCGCTGGTGACCCCGCCTGCTAAGTTGTTGATTCT
GATGCGTCAGATCTCAGCGAGATAATTTGGACCGTTCCATGATGAATGAAAGAATGAAAGAATG
AGTAAAAGTATTTGTTGAACTATAGGGTAGATAATGTACAAAGCGGCACAGAGTTGTTTGAATT
GTTAAATGACAATAGAAAATGTTTTGGGATTTTTTGCCAATCTTGTCATTGCAATTCACTGAGT
TTTTAAGAAAATGAGAAAAAGGAAGAAAACAGGTGTTATTTTATGATTTGTAAAGCTATACTGT
TGTTGACATCAGGGAATATATTTCTTTAAGTCATAGGCTCAAATGGTTTGTTTCTTTGGCACCT
TTTTCTGAACTGTAAGTTTCCAGTGATGTCACTTAGGCTTTCCGTCCTAATGCAAGTCATGTAT
TTGTGACACTAAGTGACTGGGAATATGTATTCCGTCCTAATGCAAGTCATGCATAGGCAAAGGT
CCTCTGTAGCCTAGTACATGCTTATACTAACCATGCATATGTGGTCATTTTATATGGTTACATG
GTGCATTTGAAAACTTACAATTATGAATTGTACCATTTCAGGTTTGCACTTGCATTTTACGGGA
ATCCAACTCGCCCACAACTTGTAGCCCTTATTGCACAAGTGAGGGATTCTCTCCATGTCTATAT
TTTGCTTTACGACATTTGCTGCATTCAGAATTCTAGTTTACAAGTACAATATCAGTGACCTAGT
TAAAACATATATATCAATTGTTAACTAATGGGTTAATCCTACTGTGACGTTGCAAAAGAAAGTT
CTTATGCTATTTGGAACTTTTCGAGATTGATTGTGGTACAAACACCTGTTGGCTACAAAAAAAG
AACTAGACTGAGCCTTGCTTCTTTCCACATATTCCCAGCAGCCACCTATATATTAACATGGGTG
GGAATTGGGAAAACTGGTAAAGTGTTTTGTGAAATGCATAACATAGAGACGCACATGCGGCCAC
ATATTTTCGTTTTGTATTCTGTCTGAATTTTGTTTGTCAGGGATTCTTATTACATAGCTATATC
TTATATACTTTTTGAAATTGACTCTGGAGAAAAATAACAGGAAGAGGTTACTTCTGCTGGTGGT
CAAATTGAACCACCTGGAATACACATGATCTATCTTCCATACTCGGATGATGTTAGATATCCTG
AGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021