Detail information of BGIOSGA001352_circ_ag.1


General Information
CircRNA Name BGIOSGA001352_circ_ag.1
ID in PlantcircBase osi_circ_010187
Alias Chr01:23491403_23496294(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 24895870-24900761  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTACATCATACTTTTCCTTACAAAGATATGATACAACGGAGTGCAAATCATCAGCCTCTTTC
CTGTAGTTTCCATACTCGAATTCTCCTTCACTTTCTcccatttccactgaaatcaaagcggaag
attccaacccctttcttggtaagtgcattcgctagatcaacaatgatgctatcattctgaaaac
aagagacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCATTTCCACTGAAATCAAAGCGGAAGATTCCAACCCCTTTCTTGGTAAGTGCATTCGCTAGA
TCAACAATGATGCTATCATTCTGAAAACAAGAGACCAAGAGTCAAGCTTCATTACGTTGGTAAA
AAAGAACTAAAAATTAGAAAACTTGTTGCTTCTCAGACAAAACTCAAGAAAAAAAATTAGTGAC
CCACATATTTTGAATAGTACAAAGGGAATTTCTTATGTAACGATATATTTATGCACCTTGGAAG
CTGTAAAACCATGGCAGATCACTACAATCTTGTTGGAACCCATGTGCTGCAGCAACCCAATGAG
TTTCTCTCCATGTTTATTCGTTACCACTACCCTTTCTTCCTGAGCAGCTGTTTAGAAACCATAT
AATAGAGTTAGAGCCCCATTGTTTTGCTTATGCTTATGCATATAAGCCAAAATTTTAAATTTTA
AAACTTAATTTTGGAGTTGATATCGTGGTTTTCTTCATCGTAGTTTATTTTACAGCATTTGCTT
TTGAATCGCTAAAGACACGCATATAAAAGTATTACTCACAAATTATTCTTGAATTGCTAATAAG
CAATTCGCATAAGCATAAGTGAAAACAACGAGGCCCTTAATTATTATATTGGAGTAACATATCT
TCTTCTCCTTTTCGTTAGCCAAAACATCATTAAATCATATACACACAAAAAGAACGCTCTCTTG
TCCGTCAGCTAGCAATCTAAACAATCCACGTTCAAGTAAAGAGGATGAATCCGGGAGGTTAAAA
AAAAAGAAAAATCAAGTAAAGGGGACTCACAGGGAACCGATGAATCCTGGGAAGAGGAGGAGAG
CGGCTCCGCCATGGCTGCCGTATGGCAGCGGCGGCGGTGGCGTGCTCCGGATTGGATCGGAGGA
TTCCCGGGGGGAGCGCAGCGAAGGGAGTGGGAGAAGAGGGATCCCCGAATCTAATCGGAGAGTT
GGTTTGGGTAGCTAAAGGAATTATGTTCCACACTAGTGACAGGGAGGCAATTGAACCCTGGAGA
GGGAGAGCCGTTGGATTGGGCTGTTGGACGGTGTAGATCAAGGTTCCCTGGCCCGTTGAACCTT
GGGTCGTACGGAGCATAGTTTTTGTATATGAGCTTCTACAAAAATGGTAGAAAAATAATGTCAA
ACGTATCTGAAAGTTAAGTTTGTCTTTGTGCCGTGTGTGCACTGCTCACTCCGTTTTATATTAT
AAGTCATTTAACTTTTTTTTCTTAGTGATTTTTTTCATGTTTAACTAAATTTATAGAAAAAATT
AGTACTCTCTTCAGGCTGATAATACTTATCGTTTTAGACAAGGGTAATGTCAAAGTTTAGAATC
TTTGATTATAAATCATTTTTAAAATATTTGTCTTTTAAATATAATGACTATATATATAAATTAG
TCTTAAAAAGTAATTTAATAAACTTATATATTTGTTAACACTTTTATATATATAGCAATGTATC
CTGCGCGCGCGCACGCACACTAATCAATCCAAAGGATACAATCCACGTGCTGTGATTTTTTTCA
GAAAACCGCCCGCGTGCTCTGTTCAATTTTGCAAATAACCCCTCGTGTTCTTTCGTCTTCTCTT
GTCCAGCTCCTTCCCATCCCAGATGAGACCAGATCGATCCCCAAATCTCTCTCCGCGCGTGCGA
CACTGCTGTATGTATGGAGCTGGCATCTTGAAATTGAATCGCCCCGCTGACGCGCGTCCTCCTT
TCGAGCTGACAGGCCCCGTTGTAGGCTCCTGCATCACGGTCACGGCGATTACGCGTCCCTCGAT
ACGCAGCTAAGAGCAGGTACAATAGCAATATATAAGCCACTTGCAAACATATTTTAAGGAAATA
AATAAGAACAGAGAAAGGCAGCGAGCTATAAATTTGTAGTCAGCTGTAGCACGCACTCCAAGAC
GCAGTGTGTGTATGATATGTGGGACCAGATATTAATAGTGTAGTATGTAACTATTGTATGAATG
AGCTATAAGATTGGCTATATATGAATTGGAGCTAGTAGTTGGCTATACCATTAAACTTGCTCTA
ACTAAACGACGAGCTGACCAATTTCAATCATCATCGCAGCCCGGCTGGTCTCCAACTCAACTTC
CAAGCAGCAGCGGTGTCCAACCGAGGGAAAAAAAACATGCAAACAGCCGGTGGGTGGGCGAGGG
AGAAGGAGGGCGCGTCGAGAGCCTCGTAACTAAGCCGTTGCTCCTCCCTCTCCACTGCCGCCCT
CGGTGAGGTGGGACTTGTCGCCATCGCCGTCGCCCTCGAAATCGATTCCGAGAGAGAAGGATGA
AATCTGGTAGAGGAGGGACCGGCGCGGCAGAGGGGGAAGCGGTGGCGGGCGAGCTTTTCGCTAT
CCTCTCCCAGACTCGCGTCGTGTCGTCGAGGATGACCACCGTGGCACGCTCCGTCGCCGACCCG
AAGACGACGTCGAGGCTCTTCTTGTCTGGCTGAGGCGACTCGTCCCTCGATATGATCCGTTCAC
CGAAGTAGACGCCGTTGGGGTCGATCAAGTAGCTTGGCGACCGCCGATGACTAGTCCCTGTCCC
CGATCGAGGACTTGACGAGTCCACGACGAGGATCAGCTTCCTCACCCGCAGGAGGCTCGCCAGG
TGGGCGCTCGTCGTCTGCTCCGCTCCCTCCTCCCGAATCCTCCGCGTCGAGATCACTCTCCTTT
TCCCCGGCGAATCCACCAGGGTTAGGAGCGGCCCTGCACTGGTGTCCCCCCACCCCCGGTGTCC
CCGTCGCTGCGCCATCCTTGTCGTCGCGCATCTCCCCTCCCACATCTCCCGCCGCCGCTCTAGA
AGAGAAGAGAGAATAGGAGGGGAAAAAAATGTGCAGCTGATATGTGGGTCCCACGTACTTTTTA
TTTTTATTTTTTTGCTGACTAGAATGCCACGTCAACGAAACCACCTATATATATACTGCCATAG
GACCATGAGTGCACAGATTATGTAAGTTTAAGGGTAAATATTTTTGATTTTGTGGTTAAGGGAC
GTCAAAAAAAAAAATCTCGCCCTTAAGTTAAGGGACCTGCGGTGAACTTATTCTTTCGGGGAAT
CAGGAAGCAGCAGCAGTTGTGCTCTGAAATCTTTTGCACGCAGAATTCTTAGTACAAACCTGAA
ATTTTATATGGTTCTACTATAGAGTTTGATATTTACAGGAATCCTGTAGGTACACAGACATCTG
CAAGAAACAATTCATATCAGTAATTCAATATGGACCTACGAAATGGTACACTAATATACACGGA
TACACCTGCTTTCTGCTTATTTGATTCCCCAAAGATTTATACCTGTTTAGAGGAGAAAAGGGAG
GCATACAAACTTGGTTAAGCAGAGAAATGGCACAAAACCTACACAAGGATCCTCCATCACAGGA
ATTCATCTCTCGTGAATGAGGTTGTCTCAGTCTCTCAGACATGCAGAAATGTGGAGAAAAGAGT
AATTTCTGAAGGGCCCATAGAGACCTGGATGAATAATTCAACAGATAGGTTTTCTATACCTAAT
TAGATGTGATGAAATCCACTACAGCATCAGCCAATTCTTCGCGATGCGCGGTGTAGTTATGATT
TGCTCCCTCAATAACTTGCAGCTTGTGATTCGGTATATGCTTCGCAAACTCATAGGCGTCTTCC
ACAGGTATAGTCTCATCTGCTGAACCGTGAACTGTGAAGAACCTGAACAAAGACGGCAAGTTAT
CTGAATATGTGCATGGCATCTTTGTTCTATTATAGCACAAGGTAACATTGTTGACTTCTAAGTT
TTTTAGTATACACGTCTATGATATAAACCGTAAACACTAATGCTGCAGTAATTTGCCGTTTCAG
TTTACAAGTTCAAAAGCAAGGGACAAGTAGGGCCCAGGATAGTTTCCTAACCTGCATTCCTTGG
TAAGGGACATGCTTACAGCACGTATATCGGTGCTGAGCCGCTCCATCAAACTCTCTTTAGTTAC
CCTGTACTGTACATTTCCTGCACCAGGTAGGACAGATGCCCATGAAAGTGACAACAAAATGTAA
ACAGCTATGCAAAGCTCGAGGCATACATGCTGCAAGAAACTTGGAAGATTAAGGTTGCACAATT
GCACAAGCTGCCTTACCTGATTTATCCTTGACATCAAGGTAGCCTTCTTTATTTATTCTATCAA
TTGATCCTTCCCCTATACGTTCTTCAATGCCTTTCTCTAAGTCAAATCTACCAGATACATTAAT
AACCAAGCGTACATCATCATAAATAGAAGCATATAGAGTTACTACATCTCCCCCTGGAAAAAGA
GATACACATTCAAATTTAACTTAGTAATATATGGCAACAAAGAAGAGAGGACATATACATTCTG
TGCAACAAAAAGAAAAGAGCACCATTAAAGAAAAGGTATTGCGGATTAGGGACATCATGTTGGT
ATTTTGCTTAGTGGAAAGATGCAAAATTTATCATAAGTTCATAATGGGAGTAAAACAAATTGGA
TATGATATGCTCCATGTGTTCCACAGAACAAATAATATAAGAATGTCATGTTCTGTTCAAATGA
ATGCCAAGACAAAACCATCAAAGCAATATATCTCCAAACAGATGCTGCAACAAGGTTTTAACAT
TATCACTAATTTGCTATCGAACACAGAGGAGCGTAATAGGCAAGTTCTTGTTAAAGAACTGGAC
GATCTTTTTTAACTTGCTAATGATGAAAACTGAATGGAATAACTCAACAGAAATGAGAATTACC
AGACCAGACCTACAAAATGGCATATATCACCTACCTTTACTATGGCCAACAATTGCTGTTACAT
CATACTTTTCCTTACAAAGATATGATACAACGGAGTGCAAATCATCAGCCTCTTTCCTGTAGTT
TCCATACTCGAATTCTCCTTCACTTTCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021