Detail information of Os03g0213900_circ_g.3


General Information
CircRNA Name Os03g0213900_circ_g.3
ID in PlantcircBase osa_circ_018519
Alias NA
Organism Oryza sativa
Position chr3: 5970553-5973084  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os03g0213900
Parent gene annotation Conserved hypothetical protein. (Os03t0213900-01);Similar to ROU
GH SHEATH2-interacting KH-domain protein. (Os03t0213900-02)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0213900-01:2
Os03t0213900-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTTGGACGTGAGTTCAGTCTCACCACCAAATTTGTATTCAGCACAATTACCTTCAAAGGAGC
CTAGAGTGGTCAAACCTGGTGGGGCATCTGTTTCTGaatttcttcttcaaaagtatatggtgct
gttccacctccgcagcaattattggatggtgtacaaacgtcaggaacaataccagatgtacacc
ctacttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTTCTTCTTCAAAAGTATATGGTGCTGTTCCACCTCCGCAGCAATTATTGGATGGTGTACAA
ACGTCAGGAACAATACCAGATGTACACCCTACTTTAGGCCCTAATGTGTTAACCGGAGCATCAC
ATTCCTTTGCATCTACTGGAGCTAATGCTTCCTTAGTTGCTCCTTCAGTGACATCTCAATCTGG
GGCCCCGTCTTATTCTGTGGTTTCACCACCTAGTAACCTGATATGTCCTAGTCAACCAGCAAAT
GGTGGGACATTTTATGGTGGCTATGGGGGCATTTATCCCCAGGCAACTCCATTGCAGCAGGTTG
CATTAACACTCAAGCATGCTTCATCATCATCAACCCAGGTTGTTTCAGCGACGTCTACATCAAC
AAGCACTGTGGCAATGGTGAACCCTTGTTCACACGCAGAAGCAGATAAACGCTCACAAAGGAGG
AAATTCCAGGAATTACCAGTTTCACAGGGCGCAACCACAGAAGTTCAGGTAGCATTTACTTGAA
TAGGCACCACTGCTATTGCCCAAAATTAATATTCGATTGAAATGAGCAGCAGTGTTACTTCATT
TGCCTATCTCGGACATCTTTATGTTTCCACCACTAAAAAAACCATCCACCCATGAATTCATTTC
CCCTGATTCATGTCGAACCCCTCTCTTCTCTACAATGTTGGCGTAGATGCCCCTCCTGTCTCTC
TCTCCACACCATTCTTAGTGTTCCATCTCCTACGGACTGCCACGCACCATCTTTAGTCCACTGA
TCTAATATCATATGTACATGGTTTTCAAAGCATTTGATACCATAGAACCCTGTGAAATTGATTT
CGATTCTATATACAGTTGATGTTCTGATGGCATCGCTACGTAAGTCCTTGCATCATCCTATTTG
AAGATGTGATTTCAGTGTCATTGTCGTAATAGTGCTTTTAATATGGTAATGTCTTCAAAGAAGG
AACTTGTGCTGCAGAATAAGCAAATGTTTTTTTAGTTCATGTTATATATTGCATATGCAACCAC
ATGAACAAATTGAATGTTTAATTATTTACTACTGTTGAGAAATCATAACTTCATTTATACTAGA
AAATCTACGATTCAAAATGTGATGTGAAATTTTCTTTTCATAGTGGTCCTTCAATGTTTACCAG
ATTGGCACGTTTTTTCTTTTTCCAAGACTGATTTATCTGCTACTGACGTTTTATTTCATTCCAG
GTATTTTCTCTGACCTTGTCTGAAGCTCACAGGGTGGTAATAGAATGTGAATTTTTCACAGGGC
TTGTTACAAGCTGGAGTTTTCACCAATGGAGTTTAACTGACGAGAGTCTTCTGCTTCTGAATTG
GATTATTGCTTGTATTTTTTGATACTACATGAGTTTTTCAACCCGTAAATTGAATTAGCAAGGC
ACAGTCTTCTGCTTCTAAAGTGGATGACTGCTTGTACTATCTTGTTACTAACCCTTTGTGTTCA
AGCTGTTGATGCCCACAAGAAGACTTCGTAAAGGACTGCATTTTTACCATTCCTTGAATTTGAA
ATTTGGTAGTTTCTTAATAGGTTTAGGTACAATTTGGTCAAGTTTTTTCCTTCCTTTTCAGTTG
GAGAAATAGGTTCAACCATTAAAGTTTTGCACGTTAAAGAGTTCTCACTCAGTGACATTCACAA
GTAGTCCTAGAAAAGCAGAAACTTCTTAGCCTAATGAAACAATAGTATTAATGCAGTACCTTTT
GCTTTATTTCTTTGTAGACACTTTTTATGAAGTTTCCGTTATGCTCTTTAGTTATATGAACTTT
AGAAAGATGTAAGTTAATCTCTATAACTCTGCATGGTTAACTGATATCCATGTATGATGCTTAC
CAGTCATAATGCTTTCAATTTATGGATTTGTGCTGTTTATGCACAAATTTTGTTGATTTCATCC
TTTATTTGTATTTCATTGTGTACTATTTACTCTAATGCAAAGGAATTTGATGGAGAAGTCTTTT
TGTTTCATTTTTCCAGAACTCACAACAGAGGTCCAAATTTGTTAAGACAGGTTTAGACGGTTTA
GGTAACATGACCAATTCATCGATTGAACCTCCAATTAAAGTTCAGCCTGGATCAAATGGGATGC
TTCTTCAAGATCAACCGCATGTTTCTGCACATCCATCTGCATCCAAGAACATGCTGCCGCCACC
ACCACCACCACCCAGGAACATGCTACCCCCACCTCCCAAGAGCATGCCTCCGCCACCACCTAAG
TTTCCTTCAAATGAGATGTCAAGAAATGAGGATAGGTGTGCAGATTTAAACAAGCCAATGGCAC
CTCCGAAGAGCATGCCACCCCCACCTCCCAAGAGCATGCCTCCGCCACCGCCTAAGTTTCCTTC
AAATGAGATGTCAAGAAATGAGGATAGGCGTTCAGATTTAAACAAGCCAATGGCACCTCCGAGA
TCCTTGGACGTGAGTTCAGTCTCACCACCAAATTTGTATTCAGCACAATTACCTTCAAAGGAGC
CTAGAGTGGTCAAACCTGGTGGGGCATCTGTTTCTG
Conservation Information
Conserved circRNAs osi_circ_014052
PMCS 0.123984123
Functional Information
Coding potential Y
Potential coding position 5972608-5970650(+)
Potential amino acid sequence MTNSSIEPPIKVQPGSNGMLLQDQPHVSAHPSASKNMLPPPPPPPRNMLPPPPKSMPPPPPKFP
SNEMSRNEDRCADLNKPMAPPKSMPPPPPKSMPPPPPKFPSNEMSRNEDRRSDLNKPMAPPRSL
DVSSVSPPNLYSAQLPSKEPRVVKPGGASVSEFLLQKYMVLFHLRSNYWMVYKRQEQYQMYTLL
*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017