Detail information of BGIOSGA031562_circ_g.2


General Information
CircRNA Name BGIOSGA031562_circ_g.2
ID in PlantcircBase osi_circ_008605
Alias Chr10:21603790_21605273(MH63RS2), Chr10:22077921_22079404(ZS97RS2), Chr10:21603790_21605273(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18719569-18721052  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA031562
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031562-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCAATTGAAAATACAGACAGTTGCTTATGAGAAAAACATACAAGTTGTGAGTACATGACTCC
ATCATACTCGTCACCACGAGCGCTGCTTTCAATCATcatcttcctcattgaccgaattatggcg
ctgatgactagacgtatctgtcaaggcaggaatattgttctttgtagaaacaagtattaacttg
gtcaagcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTTCCTCATTGACCGAATTATGGCGCTGATGACTAGACGTATCTGTCAAGGCAGGAATATT
GTTCTTTGTAGAAACAAGTATTAACTTGGTCAAGCGTTGTATTCTGCTCATCAGAGCAGCTTTT
GCTTCCTCTTCCTCCTCCAGGCGAGATTGCATTTTTACCTGGCCCTCCTCCAACTAAACAAGAT
AAAAAAAAAGAGTAACTTATTAGGCATTTATTAACTTAACAGCATAAATCATAGGTATCCTAAA
AGAAAATAGCCACAATTGCGAGCAGACACAACCACAGAACTCCAGTAATTTCTCTCGCAAATAG
CAAAAGGAACAGACCTGTTGGCGTAAAATCATGATTTCTTCCTGACTAGCACCTCCAATCAATC
CTCTCCTTAGCTGATCAAGCTCTTGCTTCAGAGAGGATATTTCTCTCTGATATTTCTTGATCAA
AGACTTCTCATCGATCATCTGGGCAGCAGAAAATCATGAAGCATCCATTAGTTCTTTCCTCCAA
AACAGTTACACAAGAAGTCAGCTGCATACACCTAGAATACTTACCCGGTTACGAGCAGCATAGA
TTTCAACACGTTTTGCTCTGCTTGCAAATTTCAATGTATTATGGGTTTCCTCCATGTTACTCGA
TGCAGGGGTGATTGTGCAAATCAGCTGTAAAATATAAGTTAATCCATCACTTGATGATCAAATT
TCAATTCATAGTGAAAGAATGGCCAACAGTGTAGCACCATGTAGTGAATTTTGAACAGAATAGC
TGCAAAAGAAAGCAAACAGGTTGGTACTTACTGAAACATGGCCATGGCCACTCAATGATGACTG
CAGCAGGCGAGTCAACTTAGAATCACGGTATGGTATATGTGTTGCTCTCCCTTCACTGAGTTTC
CCAATAACCTGTGGGTTTGAAATTTTCAGAGTAAGTAGGACCAACAGTGATTAAGATTAAGATT
ACAACAAATGTTGTGAATTGGAAGTTTTTCCTCAGGCGCATCATTTCATTCTTTTAGGGGTTGC
ATGGGATTAGTTATTTTTATATATTCAACAGTTCCAACAATAAATTATTAGCAACATAAAAACA
ACATAAACCAGATGCTTCCCAAGTCCAACCTGAACTTGGTAGTTGCAATCATGTTCTAACTCCT
AACACATCTCAAGAAAACAAATAATAATTGATTTCTAACTACAATTATGAGTTATGAATGGTGG
TGGCTAGCACCAAGAACTTACAGTTCCCAGAGTTAAAAGACTCTTGTTAATGTATGATCCTTCC
CTTCTTCTCAGTCCTGTAGTCTCTGTCTTAGAACTCTCTGACCCAGCTAGATCAATCAAATTCT
ACAAAATACAATAGCACAGAAATGTAAGACTAGAAAGCTGGAGCAATTGAAAATACAGACAGTT
GCTTATGAGAAAAACATACAAGTTGTGAGTACATGACTCCATCATACTCGTCACCACGAGCGCT
GCTTTCAATCAT
Conservation Information
Conserved circRNAs osa_circ_007656
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021