Detail information of AT2G05710_circ_g.1


General Information
CircRNA Name AT2G05710_circ_g.1
ID in PlantcircBase ath_circ_012887
Alias At_ciR2669
Organism Arabidpsis thaliana
Position chr2: 2141473-2141702  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G05710.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCATCTTCCGCTTCTTCCTCCATCATCCGAGCTGCTTCTTCTCGCTCTTCTTCTCTTTTCT
CTTTCCGATCGGTTTTATCTCCCTCCGTTTCATCTAtccgacgtcagattcaaaatcctccatg
atcgatcccaattgatcaatcaataaccttatcttcttcatcttctctgtcagtatctgaatct
gcatctgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCCGACGTCAGATTCAAAATCCTCCATGATCGATCCCAATTGATCAATCAATAACCTTATCTTC
TTCATCTTCTCTGTCAGTATCTGAATCTGCATCTGGAAGCGTGATTTCATCATCATGTATTTAA
CCGCTTCATCTTCCGCTTCTTCCTCCATCATCCGAGCTGCTTCTTCTCGCTCTTCTTCTCTTTT
CTCTTTCCGATCGGTTTTATCTCCCTCCGTTTCATCTA
Conservation Information
Conserved circRNAs NA
PMCS 0.163439564
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015