Detail information of AT2G03140_circ_g.4


General Information
CircRNA Name AT2G03140_circ_g.4
ID in PlantcircBase ath_circ_012646
Alias 2:949171-949374
Organism Arabidpsis thaliana
Position chr2: 949171-949374  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03140
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G03140.9:1
AT2G03140.4:1
AT2G03140.8:1
AT2G03140.11:1
AT2G03140.2:1
AT2G03140.1:1
AT2G03140.12:1
AT2G03140.3:1
AT2G03140.5:1
AT2G03140.10:1
AT2G03140.7:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTTGGCACTTATTCTTTATCCGAAACGTTCTCCAGAAACCAAGATGCAGAAATATAATTAAG
AAGAAGAAGGCAAACAGTAAGAAATGACATGTTGTGagtcaggtggattcctcacttacaaccc
aagttccccggtttggattgcagggagccgcccatcacagccttttagtggagttgttggtctt
atggtctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTCAGGTGGATTCCTCACTTACAACCCAAGTTCCCCGGTTTGGATTGCAGGGAGCCGCCCATC
ACAGCCTTTTAGTGGAGTTGTTGGTCTTATGGTCTCTTTGGCGTTGGCACTTATTCTTTATCCG
AAACGTTCTCCAGAAACCAAGATGCAGAAATATAATTAAGAAGAAGAAGGCAAACAGTAAGAAA
TGACATGTTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.191200903
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020