Detail information of AT2G02860_circ_g.3


General Information
CircRNA Name AT2G02860_circ_g.3
ID in PlantcircBase ath_circ_012618
Alias 2:830350-830773
Organism Arabidpsis thaliana
Position chr2: 830350-830773  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02860
Parent gene annotation Sucrose transport protein SUC3
Parent gene strand -
Alternative splicing AT2G02860_circ_g.4
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02860.1:3
AT2G02860.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCTGATTCTAGAGTTTGAATAGAAATTCTGTTCTGTTAAGTGTATGGTTATATTCCATTATT
ACCTGATAGATCAGCTAGAAGAGCACGAGCAGGTCCcactgcaagaagaaacgctgctttgaga
tttccacatgcagcacaacatgctctactagttaaaaaagggaaccatctgcgcagtaaaattg
cctgatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACTGCAAGAAGAAACGCTGCTTTGAGATTTCCACATGCAGCACAACATGCTCTACTAGTTAAA
AAAGGGAACCATCTGCGCAGTAAAATTGCCTGATCATTTAACAGCTGGCGGAAAATGCAAAATT
GCAAATGAGGAAAAAGAATACAAGATTTTGAGAATAAGGATCTCAAAGATTACTCTTGCCATTT
TCCGCTAGCACCGGCAGAAAACCCAAGGATGTTCCCAATAGCCATCCACAAGCAGAACACAGCA
TTTGCAGTATTCCGCTGATCAGGACCTAGGGACAGCAAGAGACATCTCATTAGAAGCACAGCAT
ATTCAATCTGATTCTAGAGTTTGAATAGAAATTCTGTTCTGTTAAGTGTATGGTTATATTCCAT
TATTACCTGATAGATCAGCTAGAAGAGCACGAGCAGGTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.213670935
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020