Detail information of AT2G04100_circ_g.1


General Information
CircRNA Name AT2G04100_circ_g.1
ID in PlantcircBase ath_circ_012756
Alias AT2G04100_C1, CircDTX6
Organism Arabidpsis thaliana
Position chr2: 1377155-1377360  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, CIRI2
Parent gene AT2G04100
Parent gene annotation Protein DETOXIFICATION 6
Parent gene strand -
Alternative splicing 2_circ_ag.2 2_circ_ag.3 AT2G04100_circ_g.2
Support reads 3
Tissues root, whole_plant, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04100.1:1
AT2G04100.2:1
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F:TGGTAAAGGGCTATGGATCG
R:TTGCCCAAGCTCCAATATGT
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAATCCTAAGAAAAGTCCAACCGGAGCTCCTAGGAGATAGTAAGCCACCACATTTGCCCAAG
CTCCAATATGTTGCCATCCACTTCCCCTAGCAACCCctgctcgttccaactcatgcaagcagtg
actatagctagtatgattccttgcgccgtagacccaaccaccacaccgatccatagccctttac
cattcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 206
Transcript exons: 1377155-1377360
CTGCTCGTTCCAACTCATGCAAGCAGTGACTATAGCTAGTATGATTCCTTGCGCCGTAGACCCA
ACCACCACACCGATCCATAGCCCTTTACCATTCATGTGACACCAAAATCCTAAGAAAAGTCCAA
CCGGAGCTCCTAGGAGATAGTAAGCCACCACATTTGCCCAAGCTCCAATATGTTGCCATCCACT
TCCCCTAGCAACCC

Genomic sequence CTGCTCGTTCCAACTCATGCAAGCAGTGACTATAGCTAGTATGATTCCTTGCGCCGTAGACCCA
ACCACCACACCGATCCATAGCCCTTTACCATTCATGTGACACCAAAATCCTAAGAAAAGTCCAA
CCGGAGCTCCTAGGAGATAGTAAGCCACCACATTTGCCCAAGCTCCAATATGTTGCCATCCACT
TCCCCTAGCAACCC
Conservation Information
Conserved circRNAs NA
PMCS 0.520844567
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Chu et al., 2017;Zhang et al., 2019