Detail information of AT1G80490_circ_g.7


General Information
CircRNA Name AT1G80490_circ_g.7
ID in PlantcircBase ath_circ_011311
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30263844-30264424  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT1G80490
Parent gene annotation Topless-related protein 1
Parent gene strand -
Alternative splicing AT1G80490_circ_g.3 AT1G80490_circ_g.4 AT1G80490_circ_g.5 AT1G80490_circ_g.6 AT1G80490_circ_g.8
Support reads 3
Tissues inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G80490.3:4
AT1G80490.2:4
AT1G80490.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAAGAGCATTTGTAATCTCAAGTCTTACCGAATAGGGAACCGTCCGGGCTCCAAATCACACG
GTTGACAGAAACGACAGGTTCTTTCACCAAAGCAGCctgaatgttttccttgtagtgagggcag
atagagtaaacaggagcttcatggccttcaaaagtataccgttttacacccgttgcagcatccc
agacctta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATGTTTTCCTTGTAGTGAGGGCAGATAGAGTAAACAGGAGCTTCATGGCCTTCAAAAGTA
TACCGTTTTACACCCGTTGCAGCATCCCAGACCTTAATTCACAGAATTGATTAGTCTGTTTTTA
GAGTTCCAACAAAAAAAAAAAAAAACAAGAGTTAAGGAAATGAAAGAAGAAAAAAAATACTGAA
CCTTGATGGTTTTGTCATCACCACAAGTAGTAACACATAGTTGCTTGTTCGGAGTGGAAAATGC
AATGTCATTGACACCGCCAACATGAGCATCAATCTGAAATAATAAAAAATGATTTTCATTACAG
GAAATGAAAGAAATACTCCTAAAATGTTGTTGTAAACTATATCACACCTCAAGGTGTTGCCTCA
TGTCTTCACCACCGTGATAAGAGTATAGCTGTACAATATGTCTCGAATAAGCAACTCCTGCAGT
TGAAAACGTGCGCATATGAATACTCAAATCGGTTGAAAGAGCATTTGTAATCTCAAGTCTTACC
GAATAGGGAACCGTCCGGGCTCCAAATCACACGGTTGACAGAAACGACAGGTTCTTTCACCAAA
GCAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.308404006
Functional Information
Coding potential Y
Potential coding position 30264229-30263846(-)
Potential amino acid sequence MRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPH
YKENIQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND
IAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQAALVKEPVVS
VNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCG
DDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQAALVKEPVVSVNRVIWSPDGSLFGVA
YSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKR
YTFEGHEAPVYSICPHYKENIQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017