Detail information of BGIOSGA033356_circ_g.1


General Information
CircRNA Name BGIOSGA033356_circ_g.1
ID in PlantcircBase osi_circ_008647
Alias Chr10:22731942_22735813(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19851413-19855284  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, find_circ
Parent gene BGIOSGA033356
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033356_circ_g.2 BGIOSGA033356_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA033356-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTATAAAAGCACTCTAGCATTCTCCTCTCTTTGTAGGTGGAGCTGAAACCGTTTGGTTGGG
CTCTAGCTCAAGGAGAGGTGGAGTTGGAGCTTTGCCggtataccttcttctcgttctcggcaag
ttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaact
gcgatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATACCTTCTTCTCGTTCTCGGCAAGTTCTCGCCGGAAATTATTCTCTCGCTCGTTTCGCCC
TCGTCGTGCTGCTGCATCAAATGCAACTGCGATTTCATTCTCTCTCTCTCTCTCTCTCTCTGTG
GTAATCGGGTGATTTTTGTGGTTTGGGGGGTTTGAGGATTCGGCTGTTGGGACTGCTTGTTTGT
CAGAGTTTGAATTCCTGCCCTTAATTCCGTCGAACAAAAATGGGTTCTCTGTTCGGATTTGGCA
CCTGCGGATTTGGCCACCGCTGCTGCGACGACGAAGACGACGGCGACGGCGACCGCCGGCCACA
CACACTACTAGTAGCCTACTAGTTCGTCTTGCTTCTCACTTGCTATTATTGTTATTATTGGAAG
CTGTGAACTCCTGTAGAAGTTGACCCCTTCTCTCCCCCTAAATATCTGTACGGCCCTGGAGACC
GGATGGATATGCCCACACCTCAGCACTCTCTCACAGTCACCACCAGTTGCCTGTAGTATCTCTT
CTTCATTCATCTTCTTCTTCCTCTCACATGTTAACAACTGTTCCATGGAGCATGTCCACGAGCT
CTGGATTGATTCTCTGGCGCGTCTCTGTGCATCTTCCTTCCCCATTCGTCGATTCTTGTTCTCG
ATCCGCGGGAAAATTGACGATTAAAGGAGGCTCCTGACCTCTGAATAAAATCAAGGACAAAAAC
GTACAAGAAGGCAGAGGTAATAAACCCAAGATAGCCAATAGACAAAGAAAAACCAAAGTAAATG
GCAGCCAATGGGAGGAAGGAGGCCGGCCGGCGTGCGTGGCCAGTAATTGCGGGGTAGGAAGAAG
GCTGCGAGCCTGCGAGCGTGCGAGACTACAAATGGAGAAACAAGCTAATGTGACATCCGGTCAG
TGAGACGAGAGATCATTGGGCGCCTACCTGCACCCTCTCTCTCTCTCTCGATCCACACCACTGC
ACTGCTCCCCTCTCGATCGTACACTGGCTGATGAGCTAGCCAAGTTGATTTCTCTCGCAAAACG
TACCACGGATTGGTCGCATCAGCTCCGTTCGTCGAGGGTATGGTGTGGGGGTATCTTTCCATCA
TACACAGTATGACGTTGGCCAAGCATGCGATATGGCTGTTTCTGAATATTTTTTCAGTTTTCAG
CAGGTCCGAATTTGTTAGGTGGAACCGTGATTTATATATTTCTCCCCTCTTCCTTGTGGATATA
GTACTCGTATTGTGTATCTTACTCCTAGTTCTCTTGCACCCACTCCAGCTGGAGAGTGGAGAGA
GTGGAGAGTACGTACCTTATCTGGCGCACACTGTACTATAATCCTTATATTTTGGTGATCAGGT
GCACCGTTTATTATAGATTAATCATCATCTCTTAGACATGGCTTGTTGCACCTTAATATCCATC
TCTTTATCAGGCTTATATGTCTACGGCAGTGAAAAAGCGTTGCCAGTTAATTCATTGTCGTGCA
TGTAGTTTCCAAACCATAGTCTAGGGAACACTTAATGTTGTTCCATGATATTAAGTGATGTTAA
GTACTCCATAACTTAATTAGTACTCCATGCCAATACTCGACAACATAATATTTCCATCACACTT
CATATATATGTATGCTCTCCCTCTTTCTCAATTAGGAAGATCTATCTAGAAAATACTTGAGTTT
GCAAGCTATGATATGCAACGAACTTTCTTCTAATGTAAGTGCAAAACTATGGATTGTCATTCAT
TACTTACGTTACTTCTTAATAAACATTATCAAGAAGCTAGATTGTAGAGCATGTAAAGCTGAGT
GGAAAAGGAGTTTTGGTAAGCATGTGATTGACATGTCTTATAGGTCGTCGATTGATCTGCCCAA
ACAACAGTACAAATGAAGTTAATTCTACTGTGAATAGCATGTGATAATGCTTATTCTTAATTGA
CTCGCAATCCGTAGAATGCTTTGGCTTTAAAACAATAATTTTAAGAGTGTGAGCAATGCTTATG
TTACTTCATCAGATTATCGTGTGCCTTAATTCTTATCTGTTGATCATATTTAGTACTCCTCCTA
CCCATAAATATATAAACACTTGAAGCATTTAAAATTTATCCACAAATATGATGATTATTCCTAG
AGTACTACTGATCCCTCTTGCCAAAATAAGTGACCAATTTGGATGTAAAATTTGTTTCAAGATA
AGTGATCACATTACAGTGCTACTTGTCTATTAATCACCTCTTGTTCAAACTTCTTATCTTACCT
CAACTACCCTCCCACTTCTAAACATCCCTCATTTAGGTCATTTGCCTTTCCTCATTATTTGGCT
CATATATAAGTGATAAAGTAGCTTATTCATTTATTTTAGAACAGATCGATGGAGTACTTATTAC
AACAATCACCCGTCATTCAAATTTCTTTCTAACTTACACTCAACCACCGTCCCACCTCCATCTC
TCTATCTTCTCCTCCAACTCTCTCTCTTTTAATGAGGGGCACCAAAATATTTTCTTCTCAACTT
TAATCTCTACTAAACAATTTGGCATGTGTATATTTGTTAATGGAGGGAGTATTTTCTAAGTTCT
AAGTACTTGATATATATCGTTTAACCAGAAATCTATACCTATGTGAAAAAAATACATTGTCCAT
AGATCGATCTTTCATGAGTATATTACTGAATCATGCCAAATTTGGCCAATGTTACATATTAATT
ATGATCTTAAAGTTTGTTCTGAAATTACTTTGCCTTGAATCTTCCAAGCAAGTATATATATACG
TGTAGGCACCACACTTCTCATGGTCAAATTTAGATATTTATCAACCTAATTAGTCAGTCCATAT
ATAGAGAGTTAATGCAACTAGCTAGTTGCTTTGTCTAATGTGAGATCTTTTGTACGTGAACTGT
AAACATTATATATACGACCTCCATCCCATATTACTTGTCGCTTTGAGTTTTTATTTGTAATGTT
TGATCATTCGTCTTATTTAAAATTTTTTTACAATTGTTATTTATTTTATTTATGATTTGCTTTA
TTATCAAAAGTATTTTAAGTATGACTTATCTTTTTTATATTTGCACTAATTTTTTAAATAAAAC
GAAGGGTCAAACGTTGTAACGAAAAAGTCAAAGCGACATCTATTGTGAGATGGAGGTAGTATGA
TCGGTGTGCTGTCTTTAGTCCTGTTTAAGATGCTTAATTTCTCTGAAATACAATTGCTCATAAT
TACAGTGTTGTTGTCAGTTTTGTCTTCTTTTCCAAATACTTTATTTGAAATATGGATAAATCAA
ACTTACCTTTTACCCTAATAAACTACACTATACATACTAATCTTAATAACATTTATGCATAACA
TTTATGGTTTTTGTTCATTCTTTTCAAATCCGTTCCATTCTGGGCAGAATGGGGCAATGCAAGT
ACTGTCACAAAGAACAAAGAACAGATGGTGCAGCCGGATATGCATATATATATACCAGCTGAAT
TTTTGGCCGTTTCAGGAAAACTTCAGTTTAAAATCAATGTTGGTATTATCAAATTAATAGCTGC
AAAGTCTCCACTAGGTCTAGCAAGAAAGTAGCAGCTCAATGGTAGTAATAACTTCATATGTTTA
TCGAACAGATATTAGCTTTCTTTAAAAGTCCATTACCAAACAAGGCTTATCTAGGGGCATAGTA
CCCCCATAGACCCATATGTAGCAGTAACAAAGAGAAAATGATTAATTACAAATATTTTAATGGG
CTTGTTTGGCAGGGCTCCAACTCTAAGTACTAGCTAAATTCTGTTCTACCTCTCTAGTTCATTT
TATAAAAGCACTCTAGCATTCTCCTCTCTTTGTAGGTGGAGCTGAAACCGTTTGGTTGGGCTCT
AGCTCAAGGAGAGGTGGAGTTGGAGCTTTGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021