Plant Circular RNA Database

Detail information of Os08g0520550_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os08g0520550_circ_g.2
					
						ID in PlantcircBase
						osa_circ_037731
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 25874501-25876388  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0520550						
					
						Parent gene annotation
						
							Similar to Auxin response factor 21. (Os08t0520550-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0520550_circ_g.3 Os08g0520550_circ_g.4 Os08g0520550_circ_g.5 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0520550-01:8

General Information
CircRNA Name	Os08g0520550_circ_g.2
ID in PlantcircBase	osa_circ_037731
Alias	NA
Organism	Oryza sativa
Position	chr8: 25874501-25876388 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0520550
Parent gene annotation	Similar to Auxin response factor 21. (Os08t0520550-01)
Parent gene strand	-
Alternative splicing	Os08g0520550_circ_g.3 Os08g0520550_circ_g.4 Os08g0520550_circ_g.5
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0520550-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAGCATGGTGACACTGTGGAGGATGCATATCAGCTTTGATGGAAGATTTGGATAGCTTGGAAT
TTGCGCATCTGCGTCCTTTCGCATAGATGCTGCAACctgaatattgcgccaatgagatgttttc
caccttactggatccagatcacttataccagttattgtacccatgtacctgcaaggaagatgtc
acaaatac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGAATATTGCGCCAATGAGATGTTTTCCACCTTACTGGATCCAGATCACTTATACCAGTTATT
GTACCCATGTACCTGCAAGGAAGATGTCACAAATACGATTCAGAAAAGAATCTTATAAAACATC
ACACATTCACAAGTGCATGAACATGAACACAGTCAACACAGAGAGCTGAATGTGACTCAATGCA
GAAAAATGATGCTCCCAAAATATCCTAAGTGTGCACAACACACACCAAGGATCTTTTTAGGTCC
AGTCTGTAGCAGGGTCCCTGTGGGAGTCAAGGTAGCTCGATATCCACCCCTTAGAGGGGGGTTT
AGGATAAAAAATTTTCAACTAAAAGGAATTTGAAGTAATGAGAACAAGTATATGTTACACAAAT
AAGATAAAGTTCAGAAACTATACCTTCTTGTTCCTGACTCTTCAGTTTCAAACATCATTCTGAA
CCGCATGCCAAGAGATAATTGGTTACCATACACTGCCTTCTGGTATTTGGCAAAAGGAATCACA
AATTCGGAAGTACTGGCCCTGAATAAACAAAAAAAAGTTCAAACAAAACTAATAACATATCATC
TCTTCATACGTTAAACCTAGCCAAAGATGTTTACCTTGGGTTATAATATATTGTAAATTGGCTG
TTATTCGCTGCAGCATGGGCTGCTGCAGCAAGAATTCCAATATGCATACTATCACTAGATAAGA
CAGATGATGAGAGGTTCGTAGGTTGCCTATTTGCTCGTCTGATCCCCAAGAGGAGCTGCTGTTT
TGCATCCCTATGGTCGGAATGAAGAAAGTTTAGTACTCCCTCAAGATTGATTTGTTACAGCAAC
ATTTTCAAGCGATAGCGAGGCAGAAAAAACAGTTTATTGGCATAATCAGTGTACCTAATAAACA
AGACTGAATCACCAGCAAGTAATCTCTTTCCACTGACAAATAGGCTCCAGCCCGTAGTCAGTAA
ATGCCTTTTAGGCTGACCTGGTGAAGAGAAAGAGAACTCATAAACTTTGAGACATTAAAGCATG
AAGTAACACCAGAGTTTCCTGAACCTTTTAGTAACCAAAGGCCAAAGCTGACATACGGCAGTTG
AATACGGGTTTCGTTTACAAGAGTAAGGCCTTTACTAAGTTGCATTAGCTTTTATCATGCATCA
AAGGGAACAACGGAATATTAGTATTTTTCTACTGTACCCCGGTATATATGACGAAATGTCCAAA
CATTATCATGCAAATCCCGGGCCTGCAGTTCCTGGGCAGGAGGCTGCATGGAGAAGTCCTAAAC
ATAATACAGTGCGCATAAGTTAGTAGAAGAAACCAAGAAAGAATCAACACTTTGTTTTCCATAA
GGTTAAAGTATGCTCACAAGACGAGGAAAAATCCTCTCAGCGGCACGGCGTGGCACAGAGAAAC
CTCCATGAGTGCTTGTATCACTGGCGGTCAGTGTTTTGCAAAAGAATTCTGTTTGTGGCCTGGT
TTGCTTCAGCGCAAGCTCTGATGCTAGCAATGTCTCCTTGTCACACTGGGTCACCTAATAATCC
CAATTCCAAAATCATGTCGGTACTGCTACATCACATAATCCAGAAGATCTAACTGAATTTGGGA
AATTGCAACCTACATTGCTAACTGGCTGGAGAGTCATTCGAGCATAAACCTCATCTGTGTCAGG
ATCAGCCTGTCATGTTTTGTCAAGAAATGTGTCAGTACAGAAGTTCAAATTATTGGCATAATAG
AGCACTAATAAAGCGTGGAGCTCTTTTTCTGTTTACTGATGCTCAAAGTGGCAGAGATTACAAG
CATGGTGACACTGTGGAGGATGCATATCAGCTTTGATGGAAGATTTGGATAGCTTGGAATTTGC
GCATCTGCGTCCTTTCGCATAGATGCTGCAAC
						
					

			
		

Sequences
Splice junction sequence	CAAGCATGGTGACACTGTGGAGGATGCATATCAGCTTTGATGGAAGATTTGGATAGCTTGGAAT TTGCGCATCTGCGTCCTTTCGCATAGATGCTGCAACctgaatattgcgccaatgagatgttttc caccttactggatccagatcacttataccagttattgtacccatgtacctgcaaggaagatgtc acaaatac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGAATATTGCGCCAATGAGATGTTTTCCACCTTACTGGATCCAGATCACTTATACCAGTTATT GTACCCATGTACCTGCAAGGAAGATGTCACAAATACGATTCAGAAAAGAATCTTATAAAACATC ACACATTCACAAGTGCATGAACATGAACACAGTCAACACAGAGAGCTGAATGTGACTCAATGCA GAAAAATGATGCTCCCAAAATATCCTAAGTGTGCACAACACACACCAAGGATCTTTTTAGGTCC AGTCTGTAGCAGGGTCCCTGTGGGAGTCAAGGTAGCTCGATATCCACCCCTTAGAGGGGGGTTT AGGATAAAAAATTTTCAACTAAAAGGAATTTGAAGTAATGAGAACAAGTATATGTTACACAAAT AAGATAAAGTTCAGAAACTATACCTTCTTGTTCCTGACTCTTCAGTTTCAAACATCATTCTGAA CCGCATGCCAAGAGATAATTGGTTACCATACACTGCCTTCTGGTATTTGGCAAAAGGAATCACA AATTCGGAAGTACTGGCCCTGAATAAACAAAAAAAAGTTCAAACAAAACTAATAACATATCATC TCTTCATACGTTAAACCTAGCCAAAGATGTTTACCTTGGGTTATAATATATTGTAAATTGGCTG TTATTCGCTGCAGCATGGGCTGCTGCAGCAAGAATTCCAATATGCATACTATCACTAGATAAGA CAGATGATGAGAGGTTCGTAGGTTGCCTATTTGCTCGTCTGATCCCCAAGAGGAGCTGCTGTTT TGCATCCCTATGGTCGGAATGAAGAAAGTTTAGTACTCCCTCAAGATTGATTTGTTACAGCAAC ATTTTCAAGCGATAGCGAGGCAGAAAAAACAGTTTATTGGCATAATCAGTGTACCTAATAAACA AGACTGAATCACCAGCAAGTAATCTCTTTCCACTGACAAATAGGCTCCAGCCCGTAGTCAGTAA ATGCCTTTTAGGCTGACCTGGTGAAGAGAAAGAGAACTCATAAACTTTGAGACATTAAAGCATG AAGTAACACCAGAGTTTCCTGAACCTTTTAGTAACCAAAGGCCAAAGCTGACATACGGCAGTTG AATACGGGTTTCGTTTACAAGAGTAAGGCCTTTACTAAGTTGCATTAGCTTTTATCATGCATCA AAGGGAACAACGGAATATTAGTATTTTTCTACTGTACCCCGGTATATATGACGAAATGTCCAAA CATTATCATGCAAATCCCGGGCCTGCAGTTCCTGGGCAGGAGGCTGCATGGAGAAGTCCTAAAC ATAATACAGTGCGCATAAGTTAGTAGAAGAAACCAAGAAAGAATCAACACTTTGTTTTCCATAA GGTTAAAGTATGCTCACAAGACGAGGAAAAATCCTCTCAGCGGCACGGCGTGGCACAGAGAAAC CTCCATGAGTGCTTGTATCACTGGCGGTCAGTGTTTTGCAAAAGAATTCTGTTTGTGGCCTGGT TTGCTTCAGCGCAAGCTCTGATGCTAGCAATGTCTCCTTGTCACACTGGGTCACCTAATAATCC CAATTCCAAAATCATGTCGGTACTGCTACATCACATAATCCAGAAGATCTAACTGAATTTGGGA AATTGCAACCTACATTGCTAACTGGCTGGAGAGTCATTCGAGCATAAACCTCATCTGTGTCAGG ATCAGCCTGTCATGTTTTGTCAAGAAATGTGTCAGTACAGAAGTTCAAATTATTGGCATAATAG AGCACTAATAAAGCGTGGAGCTCTTTTTCTGTTTACTGATGCTCAAAGTGGCAGAGATTACAAG CATGGTGACACTGTGGAGGATGCATATCAGCTTTGATGGAAGATTTGGATAGCTTGGAATTTGC GCATCTGCGTCCTTTCGCATAGATGCTGCAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.165023199

Conservation Information
Conserved circRNAs	NA
PMCS	0.165023199

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							25876380-25874944(+)
25876378-25874503(-)
						
						Potential amino acid sequence
						
							MLQPEYCANEMFSTLLDPDHLYQLLYPCTFLFLTLQFQTSF*(+)
MRKDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELAL
KQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRH
IYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSDSM
HIGILAAAAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYGNQLSLGMRFRMMFETEESGT
RRYMGTITGISDLDPVRWKTSHWRNIQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPD
TDEVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAE
RIFPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI
RDAKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSQFTIYYNPRASTSEFVI
PFAKYQKAVYGNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQVAASMR
KDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELALKQ
TRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRHIY
RGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSDSMHI
GILAAAAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYGNQLSLGMRFRMMFETEESGTRR
YMGTITGISDLDPVRWKTSHWRNIQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPDTD
EVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERI
FPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRD
AKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSQFTIYYNPRASTSEFVIPF
AKYQKAVYGNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	25876380-25874944(+) 25876378-25874503(-)
Potential amino acid sequence	MLQPEYCANEMFSTLLDPDHLYQLLYPCTFLFLTLQFQTSF*(+) MRKDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELAL KQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRH IYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSDSM HIGILAAAAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYGNQLSLGMRFRMMFETEESGT RRYMGTITGISDLDPVRWKTSHWRNIQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPD TDEVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAE RIFPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI RDAKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSQFTIYYNPRASTSEFVI PFAKYQKAVYGNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQVAASMR KDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELALKQ TRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRHIY RGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSDSMHI GILAAAAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYGNQLSLGMRFRMMFETEESGTRR YMGTITGISDLDPVRWKTSHWRNIQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPDTD EVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERI FPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRD AKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSQFTIYYNPRASTSEFVIPF AKYQKAVYGNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0520550_circ_g.2

Address

Any questions?

Supported by