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circRNA ID
AT1G01560_circ_g.3
Alias
ath_circ_000081
Organism
Arabidpsis thaliana
Position
chr1: 204026-204173  JBrowse»
Reference genome
TAIR10.38
Type  
u-circRNA
Identification method
CIRI
Parent gene
Parent gene annotation
Mitogen-activated protein kinase 11
Parent gene strand
+
Alternative splicing
Splice junction sequence  
CCGTTCCATTTTGATTTCGAGCAACCTTCATTGACGGAAGAGAACATCAAGGAGCTTATATATC
GTGAATCAGTcagtcgatgaagccttgtgccacccttacttagcaccgctacacgaatataacg
aggaacctgtgtgtgtgaga
Support reads
2
Tissues
NA
Exon boundary  
No-No
Splicing signals  
CA-TG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CAGTCGATGAAGCCTTGTGCCACCCTTACTTAGCACCGCTACACGAATATAACGAGGAACCTGT
GTGTGTGAGACCGTTCCATTTTGATTTCGAGCAACCTTCATTGACGGAAGAGAACATCAAGGAG
CTTATATATCGTGAATCAGT
Number of exons covered
AT1G01560.1:1
AT1G01560.4:1
AT1G01560.2:1
AT1G01560.3:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Sun et al., 2016

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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