Detail information of AT3G10160_circ_g.5


General Information
CircRNA Name AT3G10160_circ_g.5
ID in PlantcircBase ath_circ_020772
Alias NA
Organism Arabidpsis thaliana
Position chr3: 3141402-3142134  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT3G10160
Parent gene annotation Folylpolyglutamate synthase
Parent gene strand -
Alternative splicing AT3G10160_circ_g.6 AT3G10160_circ_g.7 AT3G10160_circ_g.8 AT3G10160_circ_g.9 AT3G10160_circ_g.10 AT3G10160_circ_g.11 AT3G10160_circ_g.12
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G10160.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGAATAGTAATATACCTTTTCACAAACAAAAATCTTAAATGCCAATACTGTGAGAAACTGAAA
AAGAGGAGGCATGGTAAGACCATCTACAGCTTTCTCctcgagattattagctgttttctgaaga
acatccattgcttcagagagttgtggtactgtgaaggcggggatttgaggctttcattaacata
caagaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 327
Transcript exons: 3141402-3141479,3141611-3141657,3141740-3141800,3141893-
3141949,3142051-3142134
CTCGAGATTATTAGCTGTTTTCTGAAGAACATCCATTGCTTCAGAGAGTTGTGGTACTGTGAAG
GCGGGGATTTGAGGCTTGAAAATCCCAGCCTTATGAAAGGCAATATCAGCTAGCGTATTTCCCA
ATATGTCCATATGATCCATCCCAAGAGAAGCAATGCCACAGACAACAGGTTTTTGAATCACATT
TGTCGAGTCAAGTTTTCCCCCAAGTCCAACTTCAATGACAGCAACATCAACCTTTTCACAAACA
AAAATCTTAAATGCCAATACTGTGAGAAACTGAAAAAGAGGAGGCATGGTAAGACCATCTACAG
CTTTCTC

Genomic sequence CTCGAGATTATTAGCTGTTTTCTGAAGAACATCCATTGCTTCAGAGAGTTGTGGTACTGTGAAG
GCGGGGATTTGAGGCTTTCATTAACATACAAGAAAACAAAGCAAATCAGAGAATTTCTTCTACA
TGAAGCTGCCAATGGGAAACTTTGAAACAAATATAGTGGATTCATAAAATTCTGAGACAAAGAA
AATCTTTTGAAAAGTACCTTGAAAATCCCAGCCTTATGAAAGGCAATATCAGCTAGCGTATTTC
CTATGTAGAATTAGCATTGAGAATCTAGAGTTAGAAGCATGAGAGAGAACCTACGTTCGACTAA
TGAAATAGTATGGCATACCCAATATGTCCATATGATCCATCCCAAGAGAAGCAATGCCACAGAC
AACAGGTTTTTGAATCTGTAGTTTACATTTTTAATGAACATAGATGTCCAACATTAAATAAATA
TGACAGATTGACGGGAAACATAAGATTTTTAAATGATGCTTACCACATTTGTCGAGTCAAGTTT
TCCCCCAAGTCCAACTTCAATGACAGCAACATCAACCTAACAGGAAGTAAGCATCCAGTTTTAG
CTACACATTAGGTTTCAATGCAATGGGAACTTAGTGAAACGTATAAGAATTCTTGATGAGAATA
GTAATATACCTTTTCACAAACAAAAATCTTAAATGCCAATACTGTGAGAAACTGAAAAAGAGGA
GGCATGGTAAGACCATCTACAGCTTTCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.237943782
Functional Information
Coding potential Y
Potential coding position 3142111-3141404(-)
Potential amino acid sequence MPPLFQFLTVLAFKIFVCEKVDVAVIEVGLGGKLDSTNVIQKPVVCGIASLGMDHMDILGNTLA
DIAFHKAGIFKPQIPAFTVPQLSEAMDVLQKTANNLEEKAVDGLTMPPLFQFLTVLAFKIFVCE
KVDVAVIEVGLGGKLDSTNVIQKPVVCGIASLGMDHMDILGNTLADIAFHKAGIFKPQIPAFTV
PQLSEAMDVLQKTANNLEEKAVDGLTMPPLFQFLTVLAFKIFVCEKVDVAVIEVGLGGKLDSTN
VIQKPVVCGIASLGMDHMDILGNTLADIAFHKAGIFKPQIPAFTVPQLSEAMDVLQKTANNLEE
KAVDGLTMPPLFQFLTVLAFKIFVCEKVDVAVIEVGLGGKLDSTNVIQKPVVCGIASLGMDHMD
ILGNTLADIAFHKAGIFKPQIPAFTVPQLSEAMDVLQKTANNLE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017