Detail information of BGIOSGA016309_circ_g.1


General Information
CircRNA Name BGIOSGA016309_circ_g.1
ID in PlantcircBase osi_circ_014307
Alias Chr04:20083665_20083959(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17325124-17325418  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016309
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TC-CA
Number of exons covered BGIOSGA016309-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTACATGAAAATCGTAAAATTGTTGATTCTACCTATATAGAATCGTGGAATCAGGCACCTTA
ACTAGGATCGTAAAGTCGTAAAATCGTATGACGGAAggtgagagtacatggcatgcattttaat
tactgtgcaaaccgatgagttgcatgcgccaaccagttcagccaagagcttaagctgacaagga
aaagagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGAGTACATGGCATGCATTTTAATTACTGTGCAAACCGATGAGTTGCATGCGCCAACCAG
TTCAGCCAAGAGCTTAAGCTGACAAGGAAAAGAGAGGCAGTTAAGGCTTGTTGTTTTACATGTT
TTTTTTTTATTTTTTTGGCGTTGTAAGGTTGTCAAAATCGTGATCCTGAAACAGCAGTCATAGA
ATCGTTTACATGAAAATCGTAAAATTGTTGATTCTACCTATATAGAATCGTGGAATCAGGCACC
TTAACTAGGATCGTAAAGTCGTAAAATCGTATGACGGAA
Conservation Information
Conserved circRNAs osa_circ_023657
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021