Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d044903_circ_g.3 |
ID in PlantcircBase | zma_circ_009837 |
Alias | zma_circ_0003235 |
Organism | Zea mays |
Position | chr9: 6788398-6795371 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d044903 |
Parent gene annotation |
Kinesin-like protein KCA2 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d044903_T005:11 Zm00001d044903_T033:11 Zm00001d044903_T042:10 Zm00001d044903_T026:11 Zm00001d044903_T003:12 Zm00001d044903_T020:12 Zm00001d044903_T032:12 Zm00001d044903_T011:11 Zm00001d044903_T028:12 Zm00001d044903_T018:11 Zm00001d044903_T006:11 Zm00001d044903_T038:12 Zm00001d044903_T021:11 Zm00001d044903_T016:12 Zm00001d044903_T035:12 Zm00001d044903_T004:11 Zm00001d044903_T024:10 Zm00001d044903_T030:7 Zm00001d044903_T039:12 Zm00001d044903_T013:12 Zm00001d044903_T009:11 Zm00001d044903_T002:12 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.09797695 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
6788534-6790651(-) |
Potential amino acid sequence |
MLAEKHKTEKEQNNQLRDQISHLLKVEQEQNLKMQERDLTIQSLQLAREDCLELRQEASDLLEY SNAKLGRVTRYLGFLADRTRKLDQAALETEARITPLIHEKKRLFNDLLTLKGNVKVFCRCRPLF EDEGPSVLEFPDDFSIRVNTGDESLTNPKKDYEFDRVYGPHIGQGELFLDVQPFVQSALDGYNI SIFAYGQSRSGKTHTLEGSSHDRGLYLRSFEELFDLSNSDTTSTAHFNFYFTACELYNDQVRDL LSESSSTVPKVRMGVQESFVELVQEKVENPLEFSAALKIALQNRSVNSPKAMVSHLIITIHIHY RNYVTGEHLYSKLSLVDLPASECLLEEDANRDNVTDFLHVSKSLSVLGDAFASLSAKKEPVLYG NSRITQILADSLGSSSKILLIVHANDSRKQLHDKEKEVLDLRQEVIGLKHSLKEANDQCILLFN EVQKAWRVSSSLQADLKVDI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |