Detail information of BGIOSGA035270_circ_g.1


General Information
CircRNA Name BGIOSGA035270_circ_g.1
ID in PlantcircBase osi_circ_009022
Alias Chr11:18849898_18851724(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13599589-13601415  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA035270
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035270_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA035270-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGGTGCCACGCCTAGTTCACCTGGAAGATCTCAGCGTGGAATGTATTCTGGAGGGGATGTA
CCTATGACTGACCAGACTGATGATGATCCATATGAGggatgactcggagaacaacgcgccgtcg
acgccggggtcgccggggttcagcacagacaggctgccgccgaacaccaccaccagccgcggcg
ccaccgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGACTCGGAGAACAACGCGCCGTCGACGCCGGGGTCGCCGGGGTTCAGCACAGACAGGCTG
CCGCCGAACACCACCACCAGCCGCGGCGCCACCGACCCGTCCTCCTACTCGGACGACGACGACG
ACGACGTGGTTGGCGCGGAGGAGGCGGAGGTCGACCCCAACGTGCTCCCCGAGGACGACGGCGT
CGTCGCCGCCGAGGAGGAGGAGGACGGGGAGGACCTCTTCAACGACAACTACCTCGAGTAAGCG
AGAATTCCCAGATCTGTTGTTCATTCTAGTTCGGTTGACAAGTGAGATCTGGTTTGATTAGAAG
TTTGTTTTTGTGGCTTAGTGGGAGAATTAGAAGTTTTAGTGTTTATGTTAAATATTTGCTTTAG
GGATTGGCAAATTTGGCCGTTGACTGGCTCATATAAGAGGGATTGACCAATTACTTGACTAAAT
TGTGTACTTTTTGGTCAAAGAATTTTAAGTACGATTTTTTACTGTAGTGGTGCTACAGATACTT
CGATGGTGTAGAAGCAAACAACTCTTAGCCTACTGTGTTCTGTCACAGTGAAATGTCCACGAAG
TTCTTTCATTTTGATTAGATAATCTCTTGCTCTGTTTAATTACCTATAGGTTTGTTAATTTTGG
TTTATATGTGTAAATTAGTTGAGGGATTTGTTGATCACTTCGCCTGTTGCCTTGATGCTTATTC
TGTTAAGTTATGTAGTTGGCACAATAAACGGATACAATACATTTGGCTGTTAATTTGCCTAATT
GATATTGTTTGAATTAACGGTCCTCTTGCTACACAGTTTCTTTTAGCAGTTCAGTACAAAGGGA
CTACCTGTCTTTATAAATCCATGAAACATTATAAAACTCTCAAGTCAATGCAAACTCGTCAGAT
GTTGCAAGTTATTGTTAAATTCCACAGTTTTGATTAACATATTGCATCTTTTCCCTCCTTTTAT
AGTGATTACCGGAGGATGGATGAGCAGGACCAGTATGAATCGGTTGGGTTAGATGACTCGATAG
AGGATGAAAGGAACCTGGATGAGATCATGGCAGATAGAAGGGCTGCTGAAGCAGAACTTGATGC
AAGGGATGTGAGGACTGGTGCAGCACCTGATAGGAAATTGCCACGGATGCTACATGATCAAGGT
AATGGCATTGTGAAAAATTGCATTTCCATGAGATATTAGAACTGAACCCCACCTTTCTGCTGTT
GTACTTTATATTCTTGTTACTTGAGAATTTGAGATATGTTAATTTGATATGGTTAGCTTTAGTC
GAATGCTATGTTTTAATGCTTCTTGGGTCAACTATATGTAACTGAGGTTGTATACTCCATTTGC
ATTTGCTTCTTTTAAGTCTGATTCAACCCGTAGTGTGGTTGTGAATTTTGAGTTTTGGACTTCA
GTGATGATTTTTTCTTAAATATTCAATATGGAGCATCACATTACTGAATATATTATCTGAGTTT
GACATTGTGGTATGGTTGTGAACTTGCAGTAGTAATCCTTTCTATATTTACTAAAATTAGTTTG
CTTGAAACTTGTTTATTCTTTCTATGAGATATTCTTTCTGGTCAGTTGGTCTTGGTAATTGTAA
GTTGAAGATAGTGTTTCTTTTATGGTGCAGACACAGATGAGGATATGAGCTTCAGGCGTCCTAA
AAGGCACAGAGCTAATTTTAGACCACCAAGGGAACCAAGAACACCAAGAAGTGATGATGACGGT
GATGGTGCCACGCCTAGTTCACCTGGAAGATCTCAGCGTGGAATGTATTCTGGAGGGGATGTAC
CTATGACTGACCAGACTGATGATGATCCATATGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021