Detail information of AT2G04540_circ_g.2


General Information
CircRNA Name AT2G04540_circ_g.2
ID in PlantcircBase ath_circ_012795
Alias Ath_circ_FC1163
Organism Arabidpsis thaliana
Position chr2: 1584219-1584448  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G04540
Parent gene annotation 3-oxoacyl-[acyl-carrier-protein] synthase
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04540.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCATCAAGAGTCAATCCTCTAATCCCACATTCTCCATCAATTAAACGCCTCCACGTTGTTT
CAACGCCTCTACCAAGTGGAGTCACCATGCCTAGACcttagagtttagccaaagggcttcatca
aattcaccagggtttgatccataaggcacaaaagcagcaactttagaagaaagctgatcaaaag
tatataac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 230
Transcript exons: 1584219-1584448
CTTAGAGTTTAGCCAAAGGGCTTCATCAAATTCACCAGGGTTTGATCCATAAGGCACAAAAGCA
GCAACTTTAGAAGAAAGCTGATCAAAAGTATATAACTTTGTCTCTTCATCAAAAGACTTCATCT
TGAGATCATCAAGAGTCAATCCTCTAATCCCACATTCTCCATCAATTAAACGCCTCCACGTTGT
TTCAACGCCTCTACCAAGTGGAGTCACCATGCCTAGAC

Genomic sequence CTTAGAGTTTAGCCAAAGGGCTTCATCAAATTCACCAGGGTTTGATCCATAAGGCACAAAAGCA
GCAACTTTAGAAGAAAGCTGATCAAAAGTATATAACTTTGTCTCTTCATCAAAAGACTTCATCT
TGAGATCATCAAGAGTCAATCCTCTAATCCCACATTCTCCATCAATTAAACGCCTCCACGTTGT
TTCAACGCCTCTACCAAGTGGAGTCACCATGCCTAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.303219271
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a