Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06560_circ_g.1 |
ID in PlantcircBase | ath_circ_000996 |
Alias | Ath_circ_FC0214 |
Organism | Arabidpsis thaliana |
Position | chr1: 2009261-2009559 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G06560 |
Parent gene annotation |
At1g06560 |
Parent gene strand | + |
Alternative splicing | AT1G06560_circ_g.2 AT1G06560_circ_g.3 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G06560.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.24315262 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2009299-2009556(+) |
Potential amino acid sequence |
MGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEIFLQNLPSIIVAHALDPYYRERSGL YIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEIFLQNLPSIIVAHALDPYYRER SGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEIFLQNLPSIIVAHALDPYY RERSGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEIFLQNLPSIIVAHAL( +) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |