Detail information of BGIOSGA016611_circ_g.3


General Information
CircRNA Name BGIOSGA016611_circ_g.3
ID in PlantcircBase osi_circ_014462
Alias Chr04:24502782_24502998(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22418343-22418559  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016611
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016611_circ_g.1 BGIOSGA016611_circ_g.2 BGIOSGA016611_circ_g.4 BGIOSGA016611_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA016611-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGAGCCCTGGATCACAGGTCTCAGCAGTTGGGAGTGAAGGGGCACCGAGGTCACGGCCAAAG
GTAAATCCGTTTGGTAATGCCAAGCCACGGGAAGTGggtgctggctgagaaagggttggattgg
aggaagatggagaccgagattgaacagaaaactagccgccctaccagctcgcagtccagccggc
cgaatagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGCTGGCTGAGAAAGGGTTGGATTGGAGGAAGATGGAGACCGAGATTGAACAGAAAACTAGC
CGCCCTACCAGCTCGCAGTCCAGCCGGCCGAATAGCGCACATTCCTCCCGCCCTGGGAGCCCTG
GATCACAGGTCTCAGCAGTTGGGAGTGAAGGGGCACCGAGGTCACGGCCAAAGGTAAATCCGTT
TGGTAATGCCAAGCCACGGGAAGTG
Conservation Information
Conserved circRNAs osa_circ_024221
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021