Detail information of Zm00001d025552_circ_ig.1


General Information
CircRNA Name Zm00001d025552_circ_ig.1
ID in PlantcircBase zma_circ_010317
Alias zma_circ_0000052
Organism Zea mays
Position chr10: 122294735-122345089  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCGCGGTACAAGTACAAGCTCCTCACTGACGTCATCATCGGCTGCTAAAACTACTACAGAGG
CTACAGCATCGAGAATCATGCATATACAAGAAGAAGgtgaacgaattggtcggtcgatatctaa
tacttactctgttacggcgtcgatgtgtacatacacaccaacgagtttgtaatactccctccat
gccttttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.15875333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs zma-miR172e
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b