Detail information of BGIOSGA016345_circ_g.1


General Information
CircRNA Name BGIOSGA016345_circ_g.1
ID in PlantcircBase osi_circ_014337
Alias Chr04:20810382_20810825(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18046430-18046873  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016345
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AA-CA
Number of exons covered BGIOSGA016345-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCACTTAACAGTAGTGTCAAGAATTGTGTTTCTAAGCACCTTCTTGCTTAAATAAGTCATGT
GTTTCCAATATTTAAATCTGGAGATCTTCTTCTCTTggtgatcacccgccctttcgtgtctcaa
cactcgctcttagatttttggttgggtcccaaactgtcgaaagagaaggactaatcactaatgc
ttatgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATCACCCGCCCTTTCGTGTCTCAACACTCGCTCTTAGATTTTTGGTTGGGTCCCAAACTG
TCGAAAGAGAAGGACTAATCACTAATGCTTATGCAATTGATGGTGATGCTCCTAATAATTGTAC
TGCATACTAGTAGTACTAGTAGTAGTGATGAGGGATGATTTGAAATTGACAAGTGAGAAGTAAA
GAAGCAAATGTAATTATACTTGCAATTATGGCCAGCATAGTGACTGCAGAAGGACTAGCCAACG
AGGAACCGCCTACCAAAAGAATCGCAACAATTTTATACATCGAGTTGCATAGATTGCTATAGAC
ATGCTTTCATTTGCTGAAGTCACCACCCACTTAACAGTAGTGTCAAGAATTGTGTTTCTAAGCA
CCTTCTTGCTTAAATAAGTCATGTGTTTCCAATATTTAAATCTGGAGATCTTCTTCTCTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021