Detail information of BGIOSGA013688_circ_g.4


General Information
CircRNA Name BGIOSGA013688_circ_g.4
ID in PlantcircBase osi_circ_005166
Alias 3:36891791|36892323
Organism Oryza sativa ssp. indica
Position chr3: 36891791-36892323  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013688
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013688_circ_g.1 BGIOSGA013688_circ_g.2 BGIOSGA013688_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013688-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGACATGGGGTTGAAGCTATTCTGCAAGCATCTTTCACTGTCTCCGGAGATTGAACACAAAAC
TGTTACTGGTCTTCTAAGATTAATTGAGAGTGAGAGgtcagccaaaattgccaacaaactttga
ggaggatacatgggctattttgaaagatgctattacagctatatttctaaaacagaaactttcg
tgcgatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAGCCAAAATTGCCAACAAACTTTGAGGAGGATACATGGGCTATTTTGAAAGATGCTATTAC
AGCTATATTTCTAAAACAGAAACTTTCGTGCGATGTTGAAAAACTTTACCAGGTAATTTTTATA
TTGCTTCTATTCTATTTGATGATCCCACTTTAGTTATTTAGAACTTGTTTTCTTCACTATAGGC
TGCAGGTGACCTTTGTCTACACAAGCTAGGCGCAAATCTATACGAACGCATAAAGAAAGAATGT
GAAGTACACATATCGGCAAAAATATCAGCATTAGTGGGTCAAGTCCAGATTTAGTAGTATTTTT
GTCTCTGGTGCAAAGAACATGGCAGATTTTTGCGATCAGATGTTGATTATTCGTGTATGCTTTA
CTTCTTGATGTAAAATATGTAAGAATGTTGCAAATCATTTGTTCAGTGTGGGACATGGGGTTGA
AGCTATTCTGCAAGCATCTTTCACTGTCTCCGGAGATTGAACACAAAACTGTTACTGGTCTTCT
AAGATTAATTGAGAGTGAGAG
Conservation Information
Conserved circRNAs osa_circ_022174*
PMCS
Functional Information
Coding potential Y
Potential coding position 36891831-36891902(-)
36892230-36891815(+)
Potential amino acid sequence MYPPQSLLAILADLSLSINLRRPVTVLCSISGDSERCLQNSFNPMSHNSFFMRSYRFAPSLCRQ
RSPAAW*(-)
MGLKLFCKHLSLSPEIEHKTVTGLLRLIESERSAKIANKL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021