Detail information of BGIOSGA032547_circ_g.5


General Information
CircRNA Name BGIOSGA032547_circ_g.5
ID in PlantcircBase osi_circ_008791
Alias Chr10:3667453_3668683(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3047595-3048862  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AA-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAAATTGACTATTATAATATTCCTTAGCCATTCATAATCACACAGTACTTGTAGTTTCTATA
TTTTTTGGTCACCTGCAATACTGTTCTACCTATAATtgtatgtattaattcattctgctcctct
ttcaccataatacatcgacctgtaatttcctagctcgggtgttccattgctgatatggctttgg
ctactctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTATGTATTAATTCATTCTGCTCCTCTTTCACCATAATACATCGACCTGTAATTTCCTAGCTC
GGGTGTTCCATTGCTGATATGGCTTTGGCTACTCTGCCAGGCTTAAAAGCTCTAATATTTTTTG
TGCCCTTTTCTTTTTCTTCTTTTTTTGGGAGCCCTACTGATGTTCATGTTTATAGTTAATCTCA
ATAGTGCTAATTGGAGTTTGTTTGTTTTTCTTCTTTTGTCAATGTCACACTCTGATCGCTGACA
AACAAGAAAAGTAGAAAACTGGATTTCTCTAGTGGATTTGCTTTTTTGAGAAAAAAAATACCAT
CGTATTGTCTCAAATTTAGGATTATAGTAAATGATCACCTTTCAATTTCAATATATTGTTATTT
TCCAATTCCAGTGTTCTGAATTGTGGATAGTGCTCCTGTTGCATGTATGCTTTCTCTAATACAA
TGTTATTTTGTCAATTCTGCACATGCTTACTTAGAATGCATGTTGCAGAATGCTATTTGAGCTC
CAGATGGTTACAGTCACTTGCATTAGGGAATGAAAATAAATTTTAACAAGCTTTGTCTGCAAAT
ATTAAGGAGTTGTATGCTATTCATGGCCCAACAACCAATTGAACAAACATTATTATGGCAGATC
ATCTTATGCAAGGTTGCCCATCCACAATCCTGCGGTTATGTCACCTAAACCTACGTTTCTTGAA
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCCCTTACA
CCCCCCCACCACCACCATCATACTTGATGGTGTTGTGAGACCATCATGGTACTTGTGACAACTG
ACAACGATGCTGCAAAGCTGATGTGGCAATGGAAAATACCTGTTTAATCAACACGTTTGAAGTA
TGCTGGATCCTTTGTGAATATTTATATTTGTAATATTTATATTGAACTTGCCTAAAACATTACA
CTTGGCGTTTAAAACCTGCAGGTCTTATGCCTTGAATACCATTACCACCTGAAACATTCACTTG
GTACCCGAAAGCTGTTAGCTCATTAATTTTGGTTCACAGTATACCATTTTGTCATTGTTTAGCA
TCGTCCTTCTAATTGGGATGTCCTAAATTGTAATAAGAGATGTCTATATGGTGATGTACAGATT
TTTTGGGTCCGGTAACACAAAATTGACTATTATAATATTCCTTAGCCATTCATAATCACACAGT
ACTTGTAGTTTCTATATTTTTTGGTCACCTGCAATACTGTTCTACCTATAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021