Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d050526_circ_g.4 |
ID in PlantcircBase | zma_circ_008076 |
Alias | zma_circ_0001836 |
Organism | Zea mays |
Position | chr4: 96824733-96828256 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d050526 |
Parent gene annotation |
Importin beta-like SAD2 |
Parent gene strand | + |
Alternative splicing | Zm00001d050526_circ_g.2 Zm00001d050526_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d050526_T020:7 Zm00001d050526_T042:6 Zm00001d050526_T004:7 Zm00001d050526_T011:7 Zm00001d050526_T005:7 Zm00001d050526_T003:5 Zm00001d050526_T038:7 Zm00001d050526_T026:7 Zm00001d050526_T017:7 Zm00001d050526_T013:6 Zm00001d050526_T019:3 Zm00001d050526_T044:6 Zm00001d050526_T027:5 Zm00001d050526_T031:6 Zm00001d050526_T022:7 Zm00001d050526_T008:8 Zm00001d050526_T006:6 Zm00001d050526_T043:5 Zm00001d050526_T040:5 Zm00001d050526_T032:7 Zm00001d050526_T039:5 Zm00001d050526_T002:7 Zm00001d050526_T007:8 Zm00001d050526_T028:7 Zm00001d050526_T015:7 Zm00001d050526_T025:7 Zm00001d050526_T041:7 Zm00001d050526_T010:7 Zm00001d050526_T014:4 Zm00001d050526_T034:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.022858357 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
96828101-96828158(+) 96824791-96828166(-) |
Potential amino acid sequence |
MPSKEKMKLRRRNLRRQMHSDVIKHFWFPSIVLPFCRYSIGGRLISCDLQAADILVPLDNYISR GTDHFLACKDPDYQQSLWKALQSIMMDENMEDSDIEPAPKLIEVVFQNCKGNVDHWVEHYLRIT IERLRRAHKPYLKCLLVQVIANALYYNPALTLEILNKLGVAADIFNHWFAMLRQVKKSGARVNF KREHDKKVCCLGLTSLIALPAAKIPADALDRIFKATLELLVAYKDQVAEAKKQNEEAADDMDGF DADEEDDDEVDSDKEMGLDDEDGDEVSSLQLQKLAAEARGFQPADDDDSDDDFSDDELHSPIDE VDPFIFFVETVQGLQASDPARFQNLMHTLDFSYQALASGIAQHAEQRKNEIEKEKSEKANAQ*( +) MQESDQFPEKCSCLMEQEYLRPANRRKLTVHQCYTGKMAKQSKGTRNAL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |