Plant Circular RNA Database

Detail information of AT5G01510_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT5G01510_circ_g.2
					
						ID in PlantcircBase
						ath_circ_035886
					
						Alias
						5:203613-205216
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 203613-205216  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G01510						
					
						Parent gene annotation
						
							Protein root UVB sensitive 5
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G01510_circ_g.3 AT5G01510_circ_g.4 						
					
						Support reads
						2
					
						Tissues
						flower
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G01510.1:5

General Information
CircRNA Name	AT5G01510_circ_g.2
ID in PlantcircBase	ath_circ_035886
Alias	5:203613-205216
Organism	Arabidpsis thaliana
Position	chr5: 203613-205216 JBrowse»
Reference genome	TAIR10.38
Type	ui-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G01510
Parent gene annotation	Protein root UVB sensitive 5
Parent gene strand	+
Alternative splicing	AT5G01510_circ_g.3 AT5G01510_circ_g.4
Support reads	2
Tissues	flower
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G01510.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGTTCTCATAGACCAGGAATCTATCCCTTTCTAACACTCGATTGATTGATTCTTCAGACTCAT
CACGCAATCTCTTGAACAGAAGAAAATAACACTGAGcgtttgtatgctctaaattttgatgcag
gacacgccgggccttgtaaagtcatttccgtttgtgttacttacatggacgagcattagacttg
ttcacctc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CGTTTGTATGCTCTAAATTTTGATGCAGGACACGCCGGGCCTTGTAAAGTCATTTCCGTTTGTG
TTACTTACATGGACGAGCATTAGACTTGTTCACCTCTGGCTACGCTACCAGTCGCTTGCAGTCC
TACAATTTAACACGGTATGAGTTTTGAAATGGATATTCTTACAATCCCAACTTGAGAAAACTCA
GATAAGTGATAACTTTGATTTGAAATATTGACAGGTAAATCTCAAGCGTGCTCGTATCATAGTA
GAATCTCATGTTGTGCACTCAGTTGTACCAGGTAAGCATATTTCTTCCCTTTATCCAGCTTATT
ATTCAACGTTCAAGTAAGACTCATAATACTATACAGGATATGTTGACTGCAACAAGCGAGAAAA
CATTTTGCTGTGGCAGAGGTTCATGAAACCTCGAATCATCTTTGGTGTATCCCTTGAAGAGTTG
TCTGGTCTGGAGAAATCTGTTTCTAAGGTAATCTTCTCCTTTCATCTTAACTGCATCCATATGT
ACTCTTGAGAGAATCTTCTGTTTGTAAGTCCAAGTTCTTGAAACTTTGATTTTTTCAGGTCAAG
GCACTCCTTAAGATGTACACAAAGGAGAAATATATTCTTACGTTGAATAAGTTGAACAAGGATA
CTGAGTTTTCTGTGTCCTTTAAGGTAAAACCTATATTACACGACTTATCTGCTTCTCATTCTCC
TCCAAAAGGGCTAAATTTAAAACCGAGCACCATACTGCATTTACTGACTCCGTCATGATTTTCC
TTGTTCTTGCACTGTGAAGAAAGAACCTAGAATACGTTACTCGTTTATTTGTCTTTCAAGTAAC
CTGATAGAGAGTTGGGTATGCTTTGGTTAGTGATTAGTTGAGAGTCTTGAAACCCATTCATGGG
TAATTAATTAGAGCATGTCAAGTTAGGACTGTGAGAGATCATAGGGATGACATACTGTTTGCTT
CTTCTTAGTTGAATAAGCTTCTTGAGAAGCATATGAGGTAGGCAGTCATTTTTCAGAAATATCG
GCTTAACCTACGGGACAAAGTTTATTCACCTTGCTGGAGAGTACTCTCAGTTACCGTGGCTAGA
GTCGACCTTTTGTTGTTTTATCAGTAAAGTGTTGCATGATCTTAATATTTCTTTGCTTTTATCA
TTCTCGTTTGAAACTACGTTACTTTACATACTTTCTGGCTTTTTTTCTACTCCTTCTCCATCAA
GTATATCGTGAATGTGAGGCCTAATCCATTTTGTTTTGCCTTGCCTTTAATTCATGAATGTAAA
ACAAATAATGCAGGTGAATGCCACAAGCAGAGACGTGTTGAGATGCCTTTGGCAAGCATATTGG
TTAGAGGAGAACATGGAAGAAAGCTTTAAAGACAAGGATAGTGTGTTCCACTGGCTGAAGCAAA
GCTTGTCGGAGATGGACAACAAGTTTGATGATTTCTTGTTCAAATTGGATACTGCTGGATGGAA
TCTACGTGAATCTAACTTGAAGGTTCCCAACCAAGTTCTCATAGACCAGGAATCTATCCCTTTC
TAACACTCGATTGATTGATTCTTCAGACTCATCACGCAATCTCTTGAACAGAAGAAAATAACAC
TGAG
						
					

			
		

Sequences
Splice junction sequence	AAGTTCTCATAGACCAGGAATCTATCCCTTTCTAACACTCGATTGATTGATTCTTCAGACTCAT CACGCAATCTCTTGAACAGAAGAAAATAACACTGAGcgtttgtatgctctaaattttgatgcag gacacgccgggccttgtaaagtcatttccgtttgtgttacttacatggacgagcattagacttg ttcacctc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CGTTTGTATGCTCTAAATTTTGATGCAGGACACGCCGGGCCTTGTAAAGTCATTTCCGTTTGTG TTACTTACATGGACGAGCATTAGACTTGTTCACCTCTGGCTACGCTACCAGTCGCTTGCAGTCC TACAATTTAACACGGTATGAGTTTTGAAATGGATATTCTTACAATCCCAACTTGAGAAAACTCA GATAAGTGATAACTTTGATTTGAAATATTGACAGGTAAATCTCAAGCGTGCTCGTATCATAGTA GAATCTCATGTTGTGCACTCAGTTGTACCAGGTAAGCATATTTCTTCCCTTTATCCAGCTTATT ATTCAACGTTCAAGTAAGACTCATAATACTATACAGGATATGTTGACTGCAACAAGCGAGAAAA CATTTTGCTGTGGCAGAGGTTCATGAAACCTCGAATCATCTTTGGTGTATCCCTTGAAGAGTTG TCTGGTCTGGAGAAATCTGTTTCTAAGGTAATCTTCTCCTTTCATCTTAACTGCATCCATATGT ACTCTTGAGAGAATCTTCTGTTTGTAAGTCCAAGTTCTTGAAACTTTGATTTTTTCAGGTCAAG GCACTCCTTAAGATGTACACAAAGGAGAAATATATTCTTACGTTGAATAAGTTGAACAAGGATA CTGAGTTTTCTGTGTCCTTTAAGGTAAAACCTATATTACACGACTTATCTGCTTCTCATTCTCC TCCAAAAGGGCTAAATTTAAAACCGAGCACCATACTGCATTTACTGACTCCGTCATGATTTTCC TTGTTCTTGCACTGTGAAGAAAGAACCTAGAATACGTTACTCGTTTATTTGTCTTTCAAGTAAC CTGATAGAGAGTTGGGTATGCTTTGGTTAGTGATTAGTTGAGAGTCTTGAAACCCATTCATGGG TAATTAATTAGAGCATGTCAAGTTAGGACTGTGAGAGATCATAGGGATGACATACTGTTTGCTT CTTCTTAGTTGAATAAGCTTCTTGAGAAGCATATGAGGTAGGCAGTCATTTTTCAGAAATATCG GCTTAACCTACGGGACAAAGTTTATTCACCTTGCTGGAGAGTACTCTCAGTTACCGTGGCTAGA GTCGACCTTTTGTTGTTTTATCAGTAAAGTGTTGCATGATCTTAATATTTCTTTGCTTTTATCA TTCTCGTTTGAAACTACGTTACTTTACATACTTTCTGGCTTTTTTTCTACTCCTTCTCCATCAA GTATATCGTGAATGTGAGGCCTAATCCATTTTGTTTTGCCTTGCCTTTAATTCATGAATGTAAA ACAAATAATGCAGGTGAATGCCACAAGCAGAGACGTGTTGAGATGCCTTTGGCAAGCATATTGG TTAGAGGAGAACATGGAAGAAAGCTTTAAAGACAAGGATAGTGTGTTCCACTGGCTGAAGCAAA GCTTGTCGGAGATGGACAACAAGTTTGATGATTTCTTGTTCAAATTGGATACTGCTGGATGGAA TCTACGTGAATCTAACTTGAAGGTTCCCAACCAAGTTCTCATAGACCAGGAATCTATCCCTTTC TAACACTCGATTGATTGATTCTTCAGACTCATCACGCAATCTCTTGAACAGAAGAAAATAACAC TGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.18499024

Conservation Information
Conserved circRNAs	NA
PMCS	0.18499024

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G01510_circ_g.2

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