Detail information of Zm00001d043075_circ_g.2


General Information
CircRNA Name Zm00001d043075_circ_g.2
ID in PlantcircBase zma_circ_000564
Alias circ119, circ1762, zma_circ_001467, Zm00001d043075_circ_g.3
Organism Zea mays
Position chr3: 188442656-188443191  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI, CIRCexplor2
Parent gene Zm00001d043075
Parent gene annotation Leucine-rich repeat protein kinase family protein
Parent gene strand +
Alternative splicing Zm00001d043075_circ_g.1
Support reads 6
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d043075_T007:2
Zm00001d043075_T003:2
Zm00001d043075_T028:2
Zm00001d043075_T012:2
Zm00001d043075_T006:2
Zm00001d043075_T016:2
Zm00001d043075_T004:2
Zm00001d043075_T026:2
Zm00001d043075_T017:2
Zm00001d043075_T009:2
Zm00001d043075_T002:2
Zm00001d043075_T008:2
Zm00001d043075_T014:2
Zm00001d043075_T020:2
Zm00001d043075_T019:2
Zm00001d043075_T011:2
Zm00001d043075_T010:2
Zm00001d043075_T018:2
Zm00001d043075_T005:2
Zm00001d043075_T013:2
Zm00001d043075_T001:2
Zm00001d043075_T015:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGACGGAAAGAAGTGACGTGTATAGCCTAGGTGTTGTTTTTCTTGAACTATTGACTGGTATG
AAGCCAATCCAGCATGGTAAAAACATTGTTAGAGAGgctaagactgaaagacctctgagctttg
gtcagagggtccatattgcgcttggtgctgcgaaaggacttctatatctacataccgaggcaaa
tcctccta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTAAGACTGAAAGACCTCTGAGCTTTGGTCAGAGGGTCCATATTGCGCTTGGTGCTGCGAAAG
GACTTCTATATCTACATACCGAGGCAAATCCTCCTATATTTCATCGTGATGTTAAGGCCAGCAA
TATTCTTCTAGATTCCAAGTTTGTAGCAAAGGTGGCTGACTTTGGTCTTTCGAGGCTTGCTCCA
GTGCCTGATATTGAAGGGACTTTGCCAGCTCATATCTCTACTGTTGTTAAGGGCACCCCAGTAA
GTGCCGTCACACCTAGCAAAGCAGCAATACCACACTCACCGTGATCCCATTTACTGCTACTTGT
CATATAACAGGGAATATTTGAGCCCACTAATATGGTGTGGAAATTTAGGTGATAATAAAATTTA
TCTTTTTCCTTCGACAGGGCTATCTCGATCCAGAATATTTCCTGACCCATAAACTGACGGAAAG
AAGTGACGTGTATAGCCTAGGTGTTGTTTTTCTTGAACTATTGACTGGTATGAAGCCAATCCAG
CATGGTAAAAACATTGTTAGAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.048195989
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b