Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Csa2G350220_circ_g.2 |
| ID in PlantcircBase | csa_circ_001113 |
| Alias | Chr2:15904580_15907548 |
| Organism | Cucumis sativus |
| Position | chrChr2: 15904580-15907548 JBrowse» |
| Reference genome | Cucumis sativus v1.5 |
| Type | e-circRNA |
| Identification method | CIRI2 |
| Parent gene | Csa2G350220 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf,root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Csa2G350220.1:9 Csa2G350220.2:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.102312454 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
15907329-15904582(-) 15904616-15907451(-) |
| Potential amino acid sequence |
MAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA NEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYI SVQIMQSSQNNDPSMKSSQAITQFLLLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKAGGA KTLDKQFIDEIMKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGLKPGERFKRLKEQEARL RQQREEEERKAEESAKAESLTVNDGDKSATVGVVVNGSLSRQDVKEDQNSIPTTTMQRVDVDSE PSATQGEILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQR YAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLA GPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSMK SSQAITQFLLLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKAGGAKTLDKQFIDEIMKQEE KQVRVQSEAPKLNSISSSTVARQEEKPTAEGLKPGERFKRLKEQEARLRQQREEEERKAEESAK AESLTVNDGDKSATVGVVVNGSLSRQDVKEDQNSIPTTTMQRVDVDSEPSATQGEILKDGLSTL HVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLY KLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISW LFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSMKSSQAITQFLLLMIGYF ALSVPSGLSLYWLTNNILSTAQQAWLQKAGGAKTLDKQFIDEIMKQEEKQVRVQSEAPKLNSIS SSTVARQEEKPTAEGLKPGERFKRLKEQEARLRQQREEEERKAEESAKAESLTVNDGDKSATVG VVVNGSLSRQDVKEDQNSIPTTTMQRVDVDSEPSATQGEILKDGLSTLHVPYAYGFAIILLTVL VKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLA TIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDT FAYLVLPVLLVVSQYISVQIMQSSQNNDPSMKSSQAITQFLLLMIGYFALSVPSGLSLYWLTNN ILSTAQQAWLQKAGGAKTLDKQFIDEIMKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGL KPGERFKRLKEQEARLRQQREEEERKAEESAKAESLTVNDGDKSATVGVVVNGSLSRQDVKEDQ NSIPTTTMQRVDVDSEPSATQGE MWIVSQVQLRERFLRMDFLLYMFLMPMALPLYFLQFLLRLLRFL* |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to salt stress in root |
| Other Information | |
|---|---|
| References | Zhu et al., 2019 |