Detail information of Csa2G350220_circ_g.2


General Information
CircRNA Name Csa2G350220_circ_g.2
ID in PlantcircBase csa_circ_001113
Alias Chr2:15904580_15907548
Organism Cucumis sativus
Position chrChr2: 15904580-15907548  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa2G350220
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa2G350220.1:9
Csa2G350220.2:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAAGGAAACGTAGCAGCCTTAACAAGAACTGTAAGAAGTATAATGGCAAAGCCATAGGCATA
AGGAACATGTAAAGTAGAAAGTCCATCCTTAAGAATctctccctgagttgcacttggctcacta
tccacatcgactctttgcatagtagtcgtgggtatggagttctgatcctcctttacatcctgcc
tggaaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCCCTGAGTTGCACTTGGCTCACTATCCACATCGACTCTTTGCATAGTAGTCGTGGGTATG
GAGTTCTGATCCTCCTTTACATCCTGCCTGGAAAGACTACCATTGACAACAACTCCAACAGTTG
CGCTCTTGTCGCCGTCATTTACAGTCAGAGATTCAGCCTTGGCAGACTCTTCCGCTTTCCTTTC
TTCTTCCTCTCTTTGCTGTCTTAACCTAGCCTCTTGCTCCTTTAACCGTTTAAATCTGAAAATG
ATCAACACATTAAAAACCACGAAGTTCTAACCTGTTTTTGGTAAGAAATGACTTCTAAGTTCTA
ACCTTTCACCAGGCTTTAGCCCTTCTGCTGTCGGCTTCTCCTCTTGACGAGCTACGGTGCTACT
TGATATTGAGTTTAACTTGGGCGCTTCACTCTGGACTCGGACTTGTTTTTCTTCTTGTTTCATG
ATTTCATCAATGAACTGTTTGTCCAGGGTTTTTGCGCCACCTGCCTTTTGAAGCCATGCTTGCT
GAGCTGTGCTCAAGATGTTATTGGTAAGCCTGAGTTACAACATCTGAGAGATATAAGAGATGCC
AAAATTCTCAAGGAGACTACAGTAAAACTAGTAGAACCAGAAATGACAAAACGGTTTTGTCTAT
GGCTGGTTCTGATTAGAAAAATTGCTTACCAATAAAGACTTAGACCAGAAGGAACTGAAAGTGC
AAAATATCCAATCATTAACAGTAGGAACTGCGTTATGGCTTGAGAACTCTTCATGCTCGGATCA
TTATTCTGGATGTCACGAATGTAAGATACATTAGATAACCCAAAATGAATCTATAGATTTTCCT
TAAGACTGAAGTTAACTGTGATATAATGACCTTAGGCATTAGAGATTAAAAACAGGAAGAATTC
ATGGGAGTTACAGCTGCAGATTTGATACAGTAATACTGGCCGTAAAAGAAAACTGATCGTCACC
ATTAAAAATTAGTTGAATTTCTTATTCGATTGTTTTTAATGTTAAATATTCTGAAAGAGGATTA
TGGTGTGATCTAAGAAGATTTGAGAATTAACATAAATGCCTAGGTAGACAGTGACACGTCAACA
AATATTGAGAAAATTACTGACCTGCGACGATTGCATAATTTGAACAGAGATGTACTGCGAAACG
ACCAGCAACACAGGCAAAACAAGATACGCAAAGGTATCTGACCACCCAAGTGGAGGATGACCAT
CCTGCTCAGTAGTCAATGCAACCATAATATAAGAATTGGCACATATCAAGTATTAGTCATTACT
CATCCTCCTTGATCAAACATCTCTCACACATCAAGAATTGCACTCAAGATGAAAGAGAAATCAT
GTAAACCAGCATCAGGCAGTGTAGCTGAAAACTCATAAATTCATTAATGACGTTCTACAAGTAT
CTAAGATTGCTACCAAGGACATAACCAGGAACAAAATTCCAACAAAATGGTTTTTGGTACTCCT
ACCAGGAAAAATTACTTTTACAAGACAGAATGCCATGTGATTAAAGTACTTACAACAAATGGAA
AGAGCCAAGAAATACCACTCCCATTTTGTCGGGAGGCAATCGTAGTTGGACCAGCCAGAGAGGG
TATCCAGAAAAAACCTTCCGTGAGGAGACCCTAAAATTTAGGCAATCAAATCAAATTAGGGATA
TAGATTAGTGAGAAATCAAAAACTCCAAAAAAATTCGAAGGTAATAATATAGCACCTCATTGGC
CACATTTGAAAGAGCTCTGTATAGTCCAATCCATACAGGAATTGTTGCCAACGTGGGTAGGCAT
CCTGAAACCCATAACAACGGTGACATGTGAGATATCAAGATTGACAAGTTTATACAAATAACTA
CGTTGAATTAAAATATTGCAACCCTCAGAAGAGTTTTAGTCTTTAAATGACAGACTTGTATAAA
TAACTATATTGACATATAAACTTGAATACGTTTTTAGGCAAAATCCAAAAAGTAATTGATGCAC
GAGTTGAAACTAATATCTAGATTTCTTAGTAGCTTTGCATCACTTCCATGGGCATATCAGCATT
AACTGTGTGAAGGACCCAATGAGAAAAATCTTATTTGTGTAACAAGAAGCGAGCTGCAAGCATG
AGCAAAATAAATCCACACAAATGCAAGAACAAGGAGGCTGTGTCTAACTACTAATCATTTCAGA
GTAACTACTGCTCTAAAAACAGGCACAATTTGAATACCTGCTAGTGGGTTTATGCCTGCTAATT
TGTACAGTCGAGCAGTCTCAAGTTGAATCCTCTCCTGCAGACAGATTAACAAGTCCAATTTGAT
CATAAATTGTAGATATTTTAATTCAATAGTACTTAAATTCCTGATGTTAAACTGATTTCCCAGT
GTACTGGTAGCCACGGTTCAAATCCCCTGTCCCAATCATTGTAAAAAAAAGATTGCTGCTGTTA
AAAGGGAGATATTTTTAGAAGTGTCCTACCACTCTCTCATGACCATAAGATGCCTGGTAAAAAT
TATTTTTCCGATTAGGTAGGTTACAACACAATTGATTACGAACTATCATAATCATGATGCCACA
ATTCCAGAAGACAATTCTAGCTTACGGTAAGCATAGTACATTGGTACTAAAAATAGCTATTATG
AGTGAACTCCCTCCCTGACATTCCAGAGATACATCCTATACAGCAAGATAGAAGTTTCAACCTG
ATCCCCAGCATAGCGTTGTTGAACAGCCTTCACTTGGGGTTGCAAAGAACGCATCGCCATTGCA
GATTCTACCTGAGTTCACCAAGAGAGTCAAGAAGTTATTAGACATGCTAAACGAATTAATGACA
AATATTCACCTAAACTCCACATTACTGATTCGGCAAAAGAACCTGCTTCTTTGTCAAAGGAAAC
GTAGCAGCCTTAACAAGAACTGTAAGAAGTATAATGGCAAAGCCATAGGCATAAGGAACATGTA
AAGTAGAAAGTCCATCCTTAAGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.102312454
Functional Information
Coding potential Y
Potential coding position 15907329-15904582(-)
15904616-15907451(-)
Potential amino acid sequence MAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA
NEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYI
SVQIMQSSQNNDPSMKSSQAITQFLLLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKAGGA
KTLDKQFIDEIMKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGLKPGERFKRLKEQEARL
RQQREEEERKAEESAKAESLTVNDGDKSATVGVVVNGSLSRQDVKEDQNSIPTTTMQRVDVDSE
PSATQGEILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQR
YAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLA
GPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSMK
SSQAITQFLLLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKAGGAKTLDKQFIDEIMKQEE
KQVRVQSEAPKLNSISSSTVARQEEKPTAEGLKPGERFKRLKEQEARLRQQREEEERKAEESAK
AESLTVNDGDKSATVGVVVNGSLSRQDVKEDQNSIPTTTMQRVDVDSEPSATQGEILKDGLSTL
HVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLY
KLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISW
LFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSMKSSQAITQFLLLMIGYF
ALSVPSGLSLYWLTNNILSTAQQAWLQKAGGAKTLDKQFIDEIMKQEEKQVRVQSEAPKLNSIS
SSTVARQEEKPTAEGLKPGERFKRLKEQEARLRQQREEEERKAEESAKAESLTVNDGDKSATVG
VVVNGSLSRQDVKEDQNSIPTTTMQRVDVDSEPSATQGEILKDGLSTLHVPYAYGFAIILLTVL
VKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLA
TIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDT
FAYLVLPVLLVVSQYISVQIMQSSQNNDPSMKSSQAITQFLLLMIGYFALSVPSGLSLYWLTNN
ILSTAQQAWLQKAGGAKTLDKQFIDEIMKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGL
KPGERFKRLKEQEARLRQQREEEERKAEESAKAESLTVNDGDKSATVGVVVNGSLSRQDVKEDQ
NSIPTTTMQRVDVDSEPSATQGE
MWIVSQVQLRERFLRMDFLLYMFLMPMALPLYFLQFLLRLLRFL*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019