Detail information of BGIOSGA034372_circ_g.4


General Information
CircRNA Name BGIOSGA034372_circ_g.4
ID in PlantcircBase osi_circ_009332
Alias Chr11:4555134_4556347(ZS97RS2), Chr11:4503093_4504306(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4230828-4232042  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2
Parent gene BGIOSGA034372
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034372_circ_g.2 BGIOSGA034372_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034372-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTACAACAGCAGGGGAGAAACAGAGAATGATACCTTCAAATCTGCTTTCGCCCTTTTCCGAGC
AGCCAACAATTCTTCAAGGATTTCAGGAAGTATACCcctttcgtgtccattttgtcaaatttct
caggatttgtccagtacaaaccagcatatctcttcttgctaatcagtagataagggaaatagat
cttctcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCGTGTCCATTTTGTCAAATTTCTCAGGATTTGTCCAGTACAAACCAGCATATCTCTTCT
TGCTAATCAGTAGATAAGGGAAATAGATCTTCTCAAACTCTAGCTTGATGGGCTGCAGGAAAGG
TATCAACATAAATATGAGTTGAACTCAAAGTAACAAAATTGGAAAAAAAAATGGATACTGCAGA
TGCAAAATTAGAAAGGAAATGCAAAGGGCAAAATTATTACGACAAGTATCATTTCAGATGATTT
TGAAACGGAGGGGCATTAATGTCAAATAACAGTTACCACAGTAGTTTATGAGTCACCTTAATAA
ATGTTCCACTAATGTAGTCTGCAGCTTCTCTTCCTAGCTTCATTGCGTCCTCAACAGTAGAAAC
ACCGAACTGTACCATTACAGAATCAGTATCTCCATAGATGACCTGTAATGCAAAAAACAAAGCA
TGAAAAGATAGAACATAAGCGAGAGGGCAGGCTAACCAAACTCATATACCAATAACTAAAGAAA
CAAAAGATCATGCAGGCAGGGAAGAAAGTGATTATTGTGCTGATGTCTGGCCACCAACTGCACA
GTTTTAGGTTTTGTCAAACAGGAATATGGCCACTCATCATTCACCTCTGCATTGTGCTCATAGC
CTCCAAGTGTCGTGAATTTATCTTCAACAAGCTTTTTTGTATGTTCAATCATCTGTCGACCTGT
TTGATAAATACATCAGTTTTATGCAATACAACATTTCTCTTGTTAGCTAACTGTACAATGAATT
TATTGATTCCAGAATTGATGCTCACCATAGCTGGTCACACTTGAAGAAATTTCTAAACAAGGTA
ATTGACCAACAGTCGCTCCAGTAAAACCATAGACAGAGTTTGCGCTTATCTGAAACATAAACCA
TCCAACAATATCATGATTCAATGAGTGCACATTTGTGTATCACTGATTTGAGGGAATTGGAGAT
AAAAAGGCTATGTAAATACTTTTAGGGCAAGCTGACGACCATCAAGAACGGCCCTTTCAAATGG
ATCCTTTGCTTCCTGAACAAGTAATTGGTGAATTTAGCATAGGATGTAAATGTAACCTAAAGTG
CAGAGGATTTTTATGTGCAATTGGCTCACTACAACAGCAGGGGAGAAACAGAGAATGATACCTT
CAAATCTGCTTTCGCCCTTTTCCGAGCAGCCAACAATTCTTCAAGGATTTCAGGAAGTATACC
Conservation Information
Conserved circRNAs osa_circ_008736
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021