Detail information of BGIOSGA013044_circ_ig.1


General Information
CircRNA Name BGIOSGA013044_circ_ig.1
ID in PlantcircBase osi_circ_013244
Alias Chr03:24147759_24148761(MH63RS2), Chr03:24147759_24148761(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 24862493-24863495  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA013044_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAACATTTAACATTCTGAATGAAGAGGGGAGGCCAGTTGCGGCTGCACTTCTTCCTTGCGGA
GTCACTTCTTGAAACACGAGTGTTATATTTGTGGTGgatatgatgacactggattcaatattaa
caaagtaaagtatgaatgaagcttgttgatagtcaaaaacaagataatgacatgggcacccaaa
acatttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATGATGACACTGGATTCAATATTAACAAAGTAAAGTATGAATGAAGCTTGTTGATAGTCAA
AAACAAGATAATGACATGGGCACCCAAAACATTTGCAGAGATAACAGCTGAAAGGTAGGATTCA
TGCTTGAATCAGGTTGCTGGAAGTGTTGAATTTGCATTGCTTCCCATTTATTTTCTATTTGACT
AACAATGCATCTTTATTCAATAATACAGTTTATCAATCTTCAAAGTAGTGCATCCTATCCCAGG
TAATTCTGCTATTGGTCAACATTTTTAGGCATTTTATCTTTGATTGGTCTTCAGTTGTTCTGTC
ATCCATGTGTTGAAATGTCCATATGGCTGTTTTTCTTTTAATGATCAATCTACAAAGCTTCATT
AGGAAGCTAAAACAGGAGTTGGCTGTTTATCAATCTACAAAGCTGTGCATTGTATTGGTGCACA
ACTATTTTTGAGAATTTCAGAGTAGAATACAGCCAATGCAAACCTATCCTGGAATTAACTGAAT
AGTTTAATTGTCCAAGCATCTTTCTCCTACTGGGGCTCAAGATGTGTTCCAGGATATCGCACCC
TCATGGTTGAATAGTTTTTTGTATTTCTAAATCAAAAACACTGTTTGTGGGTTGACATCATCTC
GTGTGCCATGCTTCTCCAGAGATTCTGATTCTTGGTTGTGGTAGACACATCCAACCGATCAGTC
CTGAGCTCCACAAATTCATTCAGTCAACTGGAATGAAACTGGAAGCAGTTGATTCGGTAAAAGA
CCAAATGCTCCTTATCAACATCATCACTTCTGTTGTAAACTTCAATGTAGCAGATATTTGTAGT
TTATTCACTACCTGCAATGTTTAGTCTTTGCACATGTTTAATCCTTCCGTTGTATGGCAGAGGA
ATGCGGCTTCAACATTTAACATTCTGAATGAAGAGGGGAGGCCAGTTGCGGCTGCACTTCTTCC
TTGCGGAGTCACTTCTTGAAACACGAGTGTTATATTTGTGGTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021