Detail information of Os10g0136800_circ_g.1


General Information
CircRNA Name Os10g0136800_circ_g.1
ID in PlantcircBase osa_circ_006166
Alias NA
Organism Oryza sativa
Position chr10: 2291011-2291882  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0136800
Parent gene annotation Hypothetical gene. (Os10t0136800-00)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGTAAATTACTTATTTGATATGTCGGATGAATTAATCTGTTCTGCAGTCAAATGCTGAAAAC
ACACCTAATTTTACTGCATTGTAAAAACATAAGTACcttttgtgagttagtaatactgcagcta
gggtaataaaaatgtgtctaaagtgaaattcacttattttggaaatttagtggacatctgacaa
atcataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTGTGAGTTAGTAATACTGCAGCTAGGGTAATAAAAATGTGTCTAAAGTGAAATTCACTTA
TTTTGGAAATTTAGTGGACATCTGACAAATCATAATCAGACAAATACTTCTGTAATCACAAATC
GCCATCCAAAACCTGTGTAACACACTAGCACCTAAAATAATAAAGGCTCCAGATATCCAAAAAA
CACACATACAAGATAAATATATGTAAACTGAATAAAATTCTAAAAGGAAGCAATATTCCTCCAA
ACAGTATATTCATAAACCTTGTAACTAGGGGGTGCATAAGTTATCTAAAATTATTCTGTGCAAG
TAATCACTAGTATGTAAATGGACTAGAGTAATACATCCTGAAGCTAACATAATCTAGTAAAAAA
TAGAACTTCATTGACCAATACAAAATATATAAATAGTGATTTCTTCTTGTGCAAATTAATACAT
TGCTTGCAGCAGGACTAAGAAGAAAAAAAAGTATTCCCTTTGTTCTTTTGTAGTGATACTCCAG
ACATTCTACAGTCTCTAGACAAGATAGAACATTAGTTTCCTTATATTAGAGTCGACAACTAAAT
ACTATATTAGTATTTTCCAAGACAAATCTAACTGTGGTTCTCTTCTCAGTGGCCAATCTAAATA
GTAAATACTTCTACATCTTTCAATGTTCAAAATTAAGAAAAAAAGAATGGACCACAACACAAGG
CTTCTAAAAGGTCATCTCGCAGAAACAGGTATTGAATGAAAAAAAATAGTGTCACTCTCTGAAA
CGAGCCAGTAAATTACTTATTTGATATGTCGGATGAATTAATCTGTTCTGCAGTCAAATGCTGA
AAACACACCTAATTTTACTGCATTGTAAAAACATAAGTAC
Conservation Information
Conserved circRNAs osi_circ_008677
PMCS 0.318581279
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017