Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G16880_circ_g.6 |
ID in PlantcircBase | ath_circ_002982 |
Alias | At_ciR1823, AT1G16880_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 5774733-5775209 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ, CIRI-full, CIRI2 |
Parent gene | AT1G16880 |
Parent gene annotation |
ACR11 |
Parent gene strand | + |
Alternative splicing | AT1G16880_circ_g.2 AT1G16880_circ_g.3 AT1G16880_circ_g.4 AT1G16880_circ_g.5 AT1G16880_circ_g.7 AT1G16880_circ_g.8 AT1G16880_circ_g.9 |
Support reads | 5/4 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G16880.1:3 AT1G16880.2:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.292899125 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5774733-5775206(+) |
Potential amino acid sequence |
MNALKNLGLNVVKANVYLDSSGKHNKFAITRADSGRKVEDPELLEAIRLTVINNLLEFHPESSS QLAMGAAFGVLPPTEPMNALKNLGLNVVKANVYLDSSGKHNKFAITRADSGRKVEDPELLEAIR LTVINNLLEFHPESSSQLAMGAAFGVLPPTEPMNALKNLGLNVVKANVYLDSSGKHNKFAITRA DSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPMNALKNLGLNVVKANV YLDSSGKHNKFAITRADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEP (+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Zhang et al., 2019 |