Plant Circular RNA Database

Detail information of Os11g0147050_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os11g0147050_circ_g.2
					
						ID in PlantcircBase
						osa_circ_008427
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 2134683-2137688  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0147050						
					
						Parent gene annotation
						
							Hypothetical protein. (Os11t0147050-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0147050_circ_g.3 Os11g0147050_circ_g.4 Os11g0147050_circ_g.5 Os11g0147050_circ_g.6 Os11g0147050_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0147000-01:9
Os11t0147050-00:9
Os11t0147000-01:9

General Information
CircRNA Name	Os11g0147050_circ_g.2
ID in PlantcircBase	osa_circ_008427
Alias	NA
Organism	Oryza sativa
Position	chr11: 2134683-2137688 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0147050
Parent gene annotation	Hypothetical protein. (Os11t0147050-00)
Parent gene strand	+
Alternative splicing	Os11g0147050_circ_g.3 Os11g0147050_circ_g.4 Os11g0147050_circ_g.5 Os11g0147050_circ_g.6 Os11g0147050_circ_g.7
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0147000-01:9 Os11t0147050-00:9 Os11t0147000-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTTATTTACCTTTGGTGTGCCGGTTGTGCCACTAGTGTAACAAATAGTGGCAACATCTTCAGG
TTTTGGAGGACGAAAAGGTCTAGAACTCATCTTTCCctatctataatttttaaacgccctccag
gcagccacaaacctatgtctccagtgtgcaaccaaccgtcctcatcaatgacctctctcctgca
tgttttca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 902
Transcript exons: 2134683-2134769,2134857-2134980,2135656-2135774,2135862-
2135991,2136138-2136226,2136358-2136446,2137221-2137314,
2137423-2137502,2137599-2137688
CTATCTATAATTTTTAAACGCCCTCCAGGCAGCCACAAACCTATGTCTCCAGTGTGCAACCAAC
CGTCCTCATCAATGACCTCTCTCGTTTGGATTTCATCCTTATAGTAACCAAAAAATATCGTAGT
TCCCCTAACACAAATTTCTCCACGAGGATATGGTTGATCCTCAGAGGTGTAATTCATTTCTGGG
ACATCCACTAGCTTAATCTCACAAGATGGATTTGGAGGTCCAACATGACCAATTAACCTATCAT
CACAATCCATTGTAGCGATGACACAGGATGTCTCTGTCATTCCATATCCTTCAATTACGAGACA
ACCGAAGCATACTCTTAGGAATTCCATGACATCTGCTGACAATGGAGAAGCACCTGAAGACATA
AGCCTCACACGTCCACCAAGCCTAGCTTTTATTTTGTTAAATACCAATTTGTCCCACATTGGGG
ACAGATTTCGTCCATTCATAATGGCTTGCCTCTTAGCATTGTATGCAGCATGAAAAAATCTTTC
TTTCAACCCTCCAGACTCCTTCACAGCATTTGTAATTGCAGCATAAATTCTGTTATATAGCCGG
GGTACGCTAGAAAATACTGTTGGTCTCAGTGCAGCCAGATCATCCATCAGCTTCAAATTATCCC
CTTGGTAGAATCCAATGGCAACTCCATAGTGAAGCAGTGCAATCTGGTTAACTCTCTCATAGAT
GTGAGCTAAAGGTAGATATGAGATGTACACATCAGATGGGTAAAACTTAATGACCACACTTGAT
CCTGCTACATTTGCGATTAAGTTCCTATGAGAAAGAACAACTCCCTTTGGTGTGCCGGTTGTGC
CACTAGTGTAACAAATAGTGGCAACATCTTCAGGTTTTGGAGGACGAAAAGGTCTAGAACTCAT
CTTTCC
						
					

						Genomic sequence
						
							CTATCTATAATTTTTAAACGCCCTCCAGGCAGCCACAAACCTATGTCTCCAGTGTGCAACCAAC
CGTCCTCATCAATGACCTCTCTCCTGCATGTTTTCAAATGTAATTTCTGAAACTCATTTAATAT
ATTTGAACTTAAATAGGAGACAGAAATACATAGCAAGATACGTTACGTTTGGATTTCATCCTTA
TAGTAACCAAAAAATATCGTAGTTCCCCTAACACAAATTTCTCCACGAGGATATGGTTGATCCT
CAGAGGTGTAATTCATTTCTGGGACATCCACTAGCTTAATCTCTGAAAAATGGCAACAGGATTT
ACATTATGAGAGTGTGATAGCACGCAAAAAAAAACAATATTTTAGTTGAAGATGAAACCTAGAC
TTATTTGGGGTTAAGAAAGGTAAATATGAGATGTCACATGTTTTACATCAGTGATGGGTTACTA
TGCACTACAACTATATGAAGCAGACTTGACTTGATGGGCGTCATGAACACTAATTCATAGATAC
GATAAGGATCTGACAGCAGGGATAAAGACAAGATCACTCTTATTGGTGCTGGGTTTATCCTGAT
TGCCAAGAGACTATAATCAAGTTAAACCTAACTTTGTGTTTACTTTATTTTTTGATGATAATAG
GGATGCAACGGTCACTTATACCGGTGGACTACATATGCTAGATAGAAATGTGTACCAATAGGCA
TTGTGTACTTTACAGTATCTCGACCATCAACAATTGGATCCTTATCATCCCAACAAAGCAATCT
CTAATTTCCTAGTTAAACCTAGAGCCAAATGTATAGGATATTAAATAACTGATCCTATTAATCT
AATTAATTATTTTGGGAAATATTATAATCTTAATGCTACAGTGGCAGACCATAACAGTGAGGGA
TTACTGTGAACAAAAGGACAAGTTTTTTATCCAAGCAAATCTAGTTACATCCTTGAAAATCCAA
ACACAGATCTTACCACAAGATGGATTTGGAGGTCCAACATGACCAATTAACCTATCATCACAAT
CCATTGTAGCGATGACACAGGATGTCTCTGTCATTCCATATCCTTCAATTACGAGACAACCGAA
GCATCTGTTAAAAAAATAAGACAAAATTTATTAGTTAATCCAAGTTATAAAATCATGCTGTCCC
AAAGGAGCATATATGAAGCCAGCTTACACTCTTAGGAATTCCATGACATCTGCTGACAATGGAG
AAGCACCTGAAGACATAAGCCTCACACGTCCACCAAGCCTAGCTTTTATTTTGTTAAATACCAA
TTTGTCCCACATTGGGGACAGATTTCGTCCTAATAACACAAAAATGTAGAATTAACATTTCATA
CATGTGGTGGATAAAAAATGGGATGACAGAAAACATGTAGGAGCTGCCTAGGAATGTCATTGCA
AAACTACATAAGACACTTAATTGCAATGAGCTTCATACTGTTCTTACCATTCATAATGGCTTGC
CTCTTAGCATTGTATGCAGCATGAAAAAATCTTTCTTTCAACCCTCCAGACTCCTTCACAGCAT
TTGTAATTCTACAGAGTAATAAACAACTAGCCAGTTAGAATTACTGAAAAGGGAAAAAATTGAT
TTCGTGCAAAAGATATGACTAGAAATAGTCATGCCAAACACGAAAGTATCTAAGTTAATGGTAT
AGTTGTATTACGCAGCATAAATTCTGTTATATAGCCGGGGTACGCTAGAAAATACTGTTGGTCT
CAGTGCAGCCAGATCATCCATCAGCTTCAAATTATCCTGGAAATGACAAAGAATTCAGAATTGG
CGGTAAAAGATTATTATGCATGCAGTAAGATGAACATTTGATATAAAAGGAAGTGATGCATATT
TGTCAAGTGTTGCACAAAGCGTTTGCTGCTTGCAAACAAGCAGCAAACACACCTGATATAACCC
TATATCTAGCTGATTCCTGTGCGCAAGGAAATCCAGCAATAGGGTAGCAATATGATAGGTGCGA
TGGTGAGGAAAGGATTATGGTGAGCAACATAGAGGTGCAGTAAACTAACATGAGATAACAAAAT
GGATCCATTTAAGACAAGGATGCCATAACAACTACTATAATGGGATGATATCTTGTAGGTGAAA
GGTCCAGCATAAAATGCATCTATTGTGTTCAATTTTTTAGCCGGGTCGGCCGAAACTCAACCAA
CCGAAATTGTATTAAGAAGAGTAGAAAGTTCAGACTTCAGAACTGTTATATAAACGACATTAGA
CTGTCGAAATCTGCTGTGTTCAATTGATCTCTGGATGATTCTTATCTAACAGTTAGAAATATTG
CACTACCTGATCCAATTCTGCTCCTATGTCTAGGGGTAACTTACAGTTACAGGAGAACTAGCAT
TACCAATTGCTTTTCCAAGTGGTTTATTTCATGTGCACCTGGCCCCGGTTATTGATATATACCT
TTTCTAAGTCAGAAACTCCATTGTTCTACATGTTCTATTATTTACACAAACAGCAAATGCAAAG
AACTACCAAATTAACATCCTGAATGGTTTTGGATCTGCATACCCCTTGGTAGAATCCAATGGCA
ACTCCATAGTGAAGCAGTGCAATCTGGTTAACTCTCTCATAGATGTGAGCTAAAGGTAGATATG
AGATGTACCTGTGGAGAGATATCAACATGACTACTATCAAAAACATTTAGAGATGATATAAATT
TATTAAGTTATAGCAGAAAGATATGAATCTAGATTTAATGTAAACTCCTCACACATCAGATGGG
TAAAACTTAATGACCACACTTGATCCTGCTACATTTGCGATTAAGTTCCTATGAGAAAGAACAA
CTCCCTGGAAATATGACATCAAGTGCCACAAGATTGAAAGGTCGAATTAGAAAGGCCCTTTGAA
TGGAGCAAAGAATAATCAGAAACATGGGTTATTTACCTTTGGTGTGCCGGTTGTGCCACTAGTG
TAACAAATAGTGGCAACATCTTCAGGTTTTGGAGGACGAAAAGGTCTAGAACTCATCTTTCC
						
					

			
		

Sequences
Splice junction sequence	GGTTATTTACCTTTGGTGTGCCGGTTGTGCCACTAGTGTAACAAATAGTGGCAACATCTTCAGG TTTTGGAGGACGAAAAGGTCTAGAACTCATCTTTCCctatctataatttttaaacgccctccag gcagccacaaacctatgtctccagtgtgcaaccaaccgtcctcatcaatgacctctctcctgca tgttttca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 902 Transcript exons: 2134683-2134769,2134857-2134980,2135656-2135774,2135862- 2135991,2136138-2136226,2136358-2136446,2137221-2137314, 2137423-2137502,2137599-2137688 CTATCTATAATTTTTAAACGCCCTCCAGGCAGCCACAAACCTATGTCTCCAGTGTGCAACCAAC CGTCCTCATCAATGACCTCTCTCGTTTGGATTTCATCCTTATAGTAACCAAAAAATATCGTAGT TCCCCTAACACAAATTTCTCCACGAGGATATGGTTGATCCTCAGAGGTGTAATTCATTTCTGGG ACATCCACTAGCTTAATCTCACAAGATGGATTTGGAGGTCCAACATGACCAATTAACCTATCAT CACAATCCATTGTAGCGATGACACAGGATGTCTCTGTCATTCCATATCCTTCAATTACGAGACA ACCGAAGCATACTCTTAGGAATTCCATGACATCTGCTGACAATGGAGAAGCACCTGAAGACATA AGCCTCACACGTCCACCAAGCCTAGCTTTTATTTTGTTAAATACCAATTTGTCCCACATTGGGG ACAGATTTCGTCCATTCATAATGGCTTGCCTCTTAGCATTGTATGCAGCATGAAAAAATCTTTC TTTCAACCCTCCAGACTCCTTCACAGCATTTGTAATTGCAGCATAAATTCTGTTATATAGCCGG GGTACGCTAGAAAATACTGTTGGTCTCAGTGCAGCCAGATCATCCATCAGCTTCAAATTATCCC CTTGGTAGAATCCAATGGCAACTCCATAGTGAAGCAGTGCAATCTGGTTAACTCTCTCATAGAT GTGAGCTAAAGGTAGATATGAGATGTACACATCAGATGGGTAAAACTTAATGACCACACTTGAT CCTGCTACATTTGCGATTAAGTTCCTATGAGAAAGAACAACTCCCTTTGGTGTGCCGGTTGTGC CACTAGTGTAACAAATAGTGGCAACATCTTCAGGTTTTGGAGGACGAAAAGGTCTAGAACTCAT CTTTCC
Genomic sequence	CTATCTATAATTTTTAAACGCCCTCCAGGCAGCCACAAACCTATGTCTCCAGTGTGCAACCAAC CGTCCTCATCAATGACCTCTCTCCTGCATGTTTTCAAATGTAATTTCTGAAACTCATTTAATAT ATTTGAACTTAAATAGGAGACAGAAATACATAGCAAGATACGTTACGTTTGGATTTCATCCTTA TAGTAACCAAAAAATATCGTAGTTCCCCTAACACAAATTTCTCCACGAGGATATGGTTGATCCT CAGAGGTGTAATTCATTTCTGGGACATCCACTAGCTTAATCTCTGAAAAATGGCAACAGGATTT ACATTATGAGAGTGTGATAGCACGCAAAAAAAAACAATATTTTAGTTGAAGATGAAACCTAGAC TTATTTGGGGTTAAGAAAGGTAAATATGAGATGTCACATGTTTTACATCAGTGATGGGTTACTA TGCACTACAACTATATGAAGCAGACTTGACTTGATGGGCGTCATGAACACTAATTCATAGATAC GATAAGGATCTGACAGCAGGGATAAAGACAAGATCACTCTTATTGGTGCTGGGTTTATCCTGAT TGCCAAGAGACTATAATCAAGTTAAACCTAACTTTGTGTTTACTTTATTTTTTGATGATAATAG GGATGCAACGGTCACTTATACCGGTGGACTACATATGCTAGATAGAAATGTGTACCAATAGGCA TTGTGTACTTTACAGTATCTCGACCATCAACAATTGGATCCTTATCATCCCAACAAAGCAATCT CTAATTTCCTAGTTAAACCTAGAGCCAAATGTATAGGATATTAAATAACTGATCCTATTAATCT AATTAATTATTTTGGGAAATATTATAATCTTAATGCTACAGTGGCAGACCATAACAGTGAGGGA TTACTGTGAACAAAAGGACAAGTTTTTTATCCAAGCAAATCTAGTTACATCCTTGAAAATCCAA ACACAGATCTTACCACAAGATGGATTTGGAGGTCCAACATGACCAATTAACCTATCATCACAAT CCATTGTAGCGATGACACAGGATGTCTCTGTCATTCCATATCCTTCAATTACGAGACAACCGAA GCATCTGTTAAAAAAATAAGACAAAATTTATTAGTTAATCCAAGTTATAAAATCATGCTGTCCC AAAGGAGCATATATGAAGCCAGCTTACACTCTTAGGAATTCCATGACATCTGCTGACAATGGAG AAGCACCTGAAGACATAAGCCTCACACGTCCACCAAGCCTAGCTTTTATTTTGTTAAATACCAA TTTGTCCCACATTGGGGACAGATTTCGTCCTAATAACACAAAAATGTAGAATTAACATTTCATA CATGTGGTGGATAAAAAATGGGATGACAGAAAACATGTAGGAGCTGCCTAGGAATGTCATTGCA AAACTACATAAGACACTTAATTGCAATGAGCTTCATACTGTTCTTACCATTCATAATGGCTTGC CTCTTAGCATTGTATGCAGCATGAAAAAATCTTTCTTTCAACCCTCCAGACTCCTTCACAGCAT TTGTAATTCTACAGAGTAATAAACAACTAGCCAGTTAGAATTACTGAAAAGGGAAAAAATTGAT TTCGTGCAAAAGATATGACTAGAAATAGTCATGCCAAACACGAAAGTATCTAAGTTAATGGTAT AGTTGTATTACGCAGCATAAATTCTGTTATATAGCCGGGGTACGCTAGAAAATACTGTTGGTCT CAGTGCAGCCAGATCATCCATCAGCTTCAAATTATCCTGGAAATGACAAAGAATTCAGAATTGG CGGTAAAAGATTATTATGCATGCAGTAAGATGAACATTTGATATAAAAGGAAGTGATGCATATT TGTCAAGTGTTGCACAAAGCGTTTGCTGCTTGCAAACAAGCAGCAAACACACCTGATATAACCC TATATCTAGCTGATTCCTGTGCGCAAGGAAATCCAGCAATAGGGTAGCAATATGATAGGTGCGA TGGTGAGGAAAGGATTATGGTGAGCAACATAGAGGTGCAGTAAACTAACATGAGATAACAAAAT GGATCCATTTAAGACAAGGATGCCATAACAACTACTATAATGGGATGATATCTTGTAGGTGAAA GGTCCAGCATAAAATGCATCTATTGTGTTCAATTTTTTAGCCGGGTCGGCCGAAACTCAACCAA CCGAAATTGTATTAAGAAGAGTAGAAAGTTCAGACTTCAGAACTGTTATATAAACGACATTAGA CTGTCGAAATCTGCTGTGTTCAATTGATCTCTGGATGATTCTTATCTAACAGTTAGAAATATTG CACTACCTGATCCAATTCTGCTCCTATGTCTAGGGGTAACTTACAGTTACAGGAGAACTAGCAT TACCAATTGCTTTTCCAAGTGGTTTATTTCATGTGCACCTGGCCCCGGTTATTGATATATACCT TTTCTAAGTCAGAAACTCCATTGTTCTACATGTTCTATTATTTACACAAACAGCAAATGCAAAG AACTACCAAATTAACATCCTGAATGGTTTTGGATCTGCATACCCCTTGGTAGAATCCAATGGCA ACTCCATAGTGAAGCAGTGCAATCTGGTTAACTCTCTCATAGATGTGAGCTAAAGGTAGATATG AGATGTACCTGTGGAGAGATATCAACATGACTACTATCAAAAACATTTAGAGATGATATAAATT TATTAAGTTATAGCAGAAAGATATGAATCTAGATTTAATGTAAACTCCTCACACATCAGATGGG TAAAACTTAATGACCACACTTGATCCTGCTACATTTGCGATTAAGTTCCTATGAGAAAGAACAA CTCCCTGGAAATATGACATCAAGTGCCACAAGATTGAAAGGTCGAATTAGAAAGGCCCTTTGAA TGGAGCAAAGAATAATCAGAAACATGGGTTATTTACCTTTGGTGTGCCGGTTGTGCCACTAGTG TAACAAATAGTGGCAACATCTTCAGGTTTTGGAGGACGAAAAGGTCTAGAACTCATCTTTCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.231061178

Conservation Information
Conserved circRNAs	NA
PMCS	0.231061178

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2137486-2134874(+)
2137684-2137681(-)
						
						Potential amino acid sequence
						
							MRKNNSLWCAGCATSVTNSGNIFRFWRTKRSRTHLSLSIIFKRPPGSHKPMSPVCNQPSSSMTS
LVWISSL*(+)
MSSRPFRPPKPEDVATICYTSGTTGTPKGVVLSHRNLIANVAGSSVVIKFYPSDVYISYLPLAH
IYERVNQIALLHYGVAIGFYQGDNLKLMDDLAALRPTVFSSVPRLYNRIYAAITNAVKESGGLK
ERFFHAAYNAKRQAIMNGRNLSPMWDKLVFNKIKARLGGRVRLMSSGASPLSADVMEFLRVCFG
CLVIEGYGMTETSCVIATMDCDDRLIGHVGPPNPSCEIKLVDVPEMNYTSEDQPYPRGEICVRG
TTIFFGYYKDEIQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRER*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2137486-2134874(+) 2137684-2137681(-)
Potential amino acid sequence	MRKNNSLWCAGCATSVTNSGNIFRFWRTKRSRTHLSLSIIFKRPPGSHKPMSPVCNQPSSSMTS LVWISSL(+) MSSRPFRPPKPEDVATICYTSGTTGTPKGVVLSHRNLIANVAGSSVVIKFYPSDVYISYLPLAH IYERVNQIALLHYGVAIGFYQGDNLKLMDDLAALRPTVFSSVPRLYNRIYAAITNAVKESGGLK ERFFHAAYNAKRQAIMNGRNLSPMWDKLVFNKIKARLGGRVRLMSSGASPLSADVMEFLRVCFG CLVIEGYGMTETSCVIATMDCDDRLIGHVGPPNPSCEIKLVDVPEMNYTSEDQPYPRGEICVRG TTIFFGYYKDEIQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRER(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0147050_circ_g.2

Address

Any questions?

Supported by