Plant Circular RNA Database

Detail information of 5_circ_ag.8

			
						 General Information
					
						CircRNA Name
						5_circ_ag.8
					
						ID in PlantcircBase
						ath_circ_041393
					
						Alias
						5:15023284-15026518
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 15023284-15026518  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 5_circ_ig.8 AT5G37793_circ_g.1 AT5G37793_circ_g.2 AT5G37793_circ_g.3 AT5G37793_circ_g.4 AT5G37793_circ_g.5 5_circ_igg.6 5_circ_igg.7 5_circ_igg.9 5_circ_igg.10 5_circ_igg.11 5_circ_igg.12 5_circ_igg.13 5_circ_ag.14 5_circ_igg.15 5_circ_ig.16 5_circ_ig.17 5_circ_ig.18 5_circ_igg.19 5_circ_igg.20 						
					
						Support reads
						3
					
						Tissues
						seedling
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.8
ID in PlantcircBase	ath_circ_041393
Alias	5:15023284-15026518
Organism	Arabidpsis thaliana
Position	chr5: 15023284-15026518 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 5_circ_ig.8 AT5G37793_circ_g.1 AT5G37793_circ_g.2 AT5G37793_circ_g.3 AT5G37793_circ_g.4 AT5G37793_circ_g.5 5_circ_igg.6 5_circ_igg.7 5_circ_igg.9 5_circ_igg.10 5_circ_igg.11 5_circ_igg.12 5_circ_igg.13 5_circ_ag.14 5_circ_igg.15 5_circ_ig.16 5_circ_ig.17 5_circ_ig.18 5_circ_igg.19 5_circ_igg.20
Support reads	3
Tissues	seedling
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATTCGGTTTTTCAGGAGTACGTTGATGAAGTTTGCGCCTGAATGGGAAGAATAATTTCTCACA
TCCAATGTGTGATGGCTGCTATAGTTATGAGACAAGgatgttagtctattcactttctagacgg
aggagacactaattgaggacaaatctttatcattttgcacttgtaatggagaaagatggagaag
attgtttt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GATGTTAGTCTATTCACTTTCTAGACGGAGGAGACACTAATTGAGGACAAATCTTTATCATTTT
GCACTTGTAATGGAGAAAGATGGAGAAGATTGTTTTCTTTCTACAAGGTATCATCTCGGGTCAC
TAGCTACCTTATTTACTTGTAAGTGCTTTAACATACTGCATGTCGTGTTAAAATTCAGTTGCTG
ATGATTCTTAAAGAAACGTTGGATATGGAGAATCTCTTACAAATGGTTCACCTTTCTTTCTTAT
GTGGTATGGAGGGTTTCGTTCTACCGCTGGTTTGCAAGAGGACACTCAAGTTTTCAAAGGTAAA
AAATCAAGTCTAGAACTGGATAGTCTCGTCTACTTTACTTCTATTTGAATTCAATTAGTACTTC
TATTTGAATTCAATTATCCTTATGACATTTCCATCTTTACAGAGCCGAGTGAAAACTGAAAAGA
TTTTTTTTTTCCGTGAAACAGAATTGCTTATCATAATTGTAACTGTAAGTCTGTTAATTCTTAG
TTATGTACTACTTTGGAAGAATTAATGACTTAGTGTTTGAATTTAGAATGCAGGTTTAGAGTGG
TTAAATGCTAAAAGGTAAGAGTGATATGTCATTAGAATTTGATGCTTCTCTGAGGTATGTCATT
AGTTTAACTGTTACTAGTTACAATGCATGACTGAGGTTTGTTAATTGGTGGTATTATCATTGTT
ATGGATTTTAGGTGGAGAATGTTTGGTAAAACTCTCGTGGTTCTTTTTATAGTTCTTTAGTGTT
ATAAAATGCATGACTGAGGCAGAGGTTTCCTAAATGGTGTTGAAATGTATCTCTGTTGTTGGCT
AGCTTTTTCTTGTCTCAGTGTCTCTTGTTAATTCTATAACAGTATAGAAATGTTTGAAAGTTCA
GGAGGTATTTCATGTTTCCTATCCGCGAGATATGGTTGACTATTCACAATTATTCCATGCTTTG
TTGTTTACTTACTAGCTATCTCTATTTTTTGTTTGCCTTTTTGCTTAATGATTTAATTCCTACG
AACATGTCTTGTTTCTTTAACTGGCTCCCTTATTTTCTCTTTTTTCTTCATTGCTTGTTTGTTC
TTCATTGGTTCCATGTGTGCTTGTTGAATTCTTTCCTAGGTTTCTTGTGTGCTTGTTGATTTCT
TTACTATGTATCTTGTGTGCTTGTTGATTTCTTTCCTAGGTTTCCTTCCTTGGTTCCATGTGTG
CTTGTTGATTTCTTTCCTTGGTTCCATGTGTGCTTGTTGATTTCTTTCCTAGGTTTCATGTGTG
CTTGTTTGTTTATTTCCTTGGTTCCATGCGTGCTTGAATATTCTTTTCCTAGGTTTCTTGTGTG
CTTGTTTTTTTTTTTTTTAATTTCTTCCATGGTTACTTGATTTGATGTTACTTCTTTGCTTTCT
TTCTTTGTTCCATGCATGCTTGTGTGTTTCATTCTCTGTTTCCTTGCGTGCCTGTTTAACTTCT
TGCTTAGTTGTTTGGTTCTTACTTGCTTCCTTGTTTTCTTCTTTCAATCCTTACTAGCCTCTTC
CTTCCTTGCTTGTTTGTTTCCTTCCTTGGTTCCATGTGTGCTTGTTGATTTCTTTCCTAGGTTC
CATGTGTGCTTGTTGATTTCTTTCCTAGGTTTCCATGTGTGCTTGTTGATTTCTTTCTTAGGTT
CCATGTGTGCTTGTTGATTTCTTTCCTAGGTTCCATGTGTGCTTGTTTGTTTATTTCCTTGGTT
CCATGCGTGCTTGATTATTTTTTTTCTTGTGTGCTTGTTTTTTTCTTTTTATCTCCATGGTTAC
TTGATTTGCTGTTACTTCTTTGCTTTCTTTCTTTGTTCCATGCATGCTTGTGTGTTTCATTCTC
TGTTTCCTTGCGTGCATGTTTAACTTCTTGCTTTTGGTTCTTACTTGCTTCCTTGTTTTCGTCT
TTCAATCCTTACTAGCCTCTTCCTTCCTTGCTTGTTTTCTCACTTGCTCCTTTATTACATGCTT
ACTTAATTTCTTTACCTACTGAACTTGTTTGACCTTTTTACTTCATTTTCTTAATCTTCTTCCT
TGCTCTAGCTTGTTTCTCTGTTGAATTTTATTTAGATAGTTCTAGGTCTCTGTTTGACAATAGT
ATAGATGGCAGACTATTGAGCGTCTATCAACGGTTTCACACGATTCCAGTTATACAATATTGGA
GGTCTATGATCATTCTTCTCTCTTTACGTCCTCGTTGATCAGGTGATTGTGGGGCTTTTATATG
TATATGTTCATGGGTTATACTAATATACAAGGTGATCTCATTTGTACATTTGCAGATTTTAATT
TCGTTTGCAATTTCTTGCAACCAGTTTCTGAAGCAAGAGCCTCATGAATTCCTGGGGACCATGA
AACAAGGTACTCCTTTTTTTTTGTAAGTCCCTCTTTGAAGATATTTATTCATTTGTATTTCTTC
TTTTCTCTAATCTTTATCAAATCCGTATTTCTCATCATTCTGATTTTTTTTTTTGTTTTTGCCT
TTCTTCTATGGCATTGGGATTTACAAGAGGGAACCCTACTTTTAAAAGGAAAGAAACATTGGCA
ATTCTCATCTCTGGATTTCTAGCAAATTTGTTTTTCTTATCATACTGATTTTGGTTTTTCTTCC
TTTCTTCTGTGGTATTGAGGGTTTTGTTCTTCCGCTGGATTACGAGAGGGCACTCAAGTTTTCA
AAGGTATGAAATCAAGCCTAGAATTTTTACTCTTAATTGAATTCAATCGTTGTTCTGTTTTGGT
TTTGCATCTTCTTTATCCATAATTACAGAGGCGAATGAAAAGATTTAAGTGTTTTCGGTGAGAC
AGAATGGCTTCACATTATTGTAAGTCTTGTAATTTTTAATTATGTATGTGTTCATGTGTGCACA
CATACATGCCTTATATGTTTATTAGAATGCAGGTTTTGACTGGTTAGCGTCATAAAGGTAATAG
TATTGGTCATCGTGATATGTCATTAGAATTTGATGCTTCTCTGAGCTATGTCATTTGTTTAACT
GTTACTAGTTAAAATGCATGACTGAGGTTTGATAATTGGTATTATTATTATGTTTTTGCTTTGC
ATGGACTTTAGGTATAGAATATTTGGTGAAAAACTCTCGCGGTTATTTTTTTTATTATGTTAGC
ATTCGGTTTTTCAGGAGTACGTTGATGAAGTTTGCGCCTGAATGGGAAGAATAATTTCTCACAT
CCAATGTGTGATGGCTGCTATAGTTATGAGACAAG
						
					

			
		

Sequences
Splice junction sequence	CATTCGGTTTTTCAGGAGTACGTTGATGAAGTTTGCGCCTGAATGGGAAGAATAATTTCTCACA TCCAATGTGTGATGGCTGCTATAGTTATGAGACAAGgatgttagtctattcactttctagacgg aggagacactaattgaggacaaatctttatcattttgcacttgtaatggagaaagatggagaag attgtttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATGTTAGTCTATTCACTTTCTAGACGGAGGAGACACTAATTGAGGACAAATCTTTATCATTTT GCACTTGTAATGGAGAAAGATGGAGAAGATTGTTTTCTTTCTACAAGGTATCATCTCGGGTCAC TAGCTACCTTATTTACTTGTAAGTGCTTTAACATACTGCATGTCGTGTTAAAATTCAGTTGCTG ATGATTCTTAAAGAAACGTTGGATATGGAGAATCTCTTACAAATGGTTCACCTTTCTTTCTTAT GTGGTATGGAGGGTTTCGTTCTACCGCTGGTTTGCAAGAGGACACTCAAGTTTTCAAAGGTAAA AAATCAAGTCTAGAACTGGATAGTCTCGTCTACTTTACTTCTATTTGAATTCAATTAGTACTTC TATTTGAATTCAATTATCCTTATGACATTTCCATCTTTACAGAGCCGAGTGAAAACTGAAAAGA TTTTTTTTTTCCGTGAAACAGAATTGCTTATCATAATTGTAACTGTAAGTCTGTTAATTCTTAG TTATGTACTACTTTGGAAGAATTAATGACTTAGTGTTTGAATTTAGAATGCAGGTTTAGAGTGG TTAAATGCTAAAAGGTAAGAGTGATATGTCATTAGAATTTGATGCTTCTCTGAGGTATGTCATT AGTTTAACTGTTACTAGTTACAATGCATGACTGAGGTTTGTTAATTGGTGGTATTATCATTGTT ATGGATTTTAGGTGGAGAATGTTTGGTAAAACTCTCGTGGTTCTTTTTATAGTTCTTTAGTGTT ATAAAATGCATGACTGAGGCAGAGGTTTCCTAAATGGTGTTGAAATGTATCTCTGTTGTTGGCT AGCTTTTTCTTGTCTCAGTGTCTCTTGTTAATTCTATAACAGTATAGAAATGTTTGAAAGTTCA GGAGGTATTTCATGTTTCCTATCCGCGAGATATGGTTGACTATTCACAATTATTCCATGCTTTG TTGTTTACTTACTAGCTATCTCTATTTTTTGTTTGCCTTTTTGCTTAATGATTTAATTCCTACG AACATGTCTTGTTTCTTTAACTGGCTCCCTTATTTTCTCTTTTTTCTTCATTGCTTGTTTGTTC TTCATTGGTTCCATGTGTGCTTGTTGAATTCTTTCCTAGGTTTCTTGTGTGCTTGTTGATTTCT TTACTATGTATCTTGTGTGCTTGTTGATTTCTTTCCTAGGTTTCCTTCCTTGGTTCCATGTGTG CTTGTTGATTTCTTTCCTTGGTTCCATGTGTGCTTGTTGATTTCTTTCCTAGGTTTCATGTGTG CTTGTTTGTTTATTTCCTTGGTTCCATGCGTGCTTGAATATTCTTTTCCTAGGTTTCTTGTGTG CTTGTTTTTTTTTTTTTTAATTTCTTCCATGGTTACTTGATTTGATGTTACTTCTTTGCTTTCT TTCTTTGTTCCATGCATGCTTGTGTGTTTCATTCTCTGTTTCCTTGCGTGCCTGTTTAACTTCT TGCTTAGTTGTTTGGTTCTTACTTGCTTCCTTGTTTTCTTCTTTCAATCCTTACTAGCCTCTTC CTTCCTTGCTTGTTTGTTTCCTTCCTTGGTTCCATGTGTGCTTGTTGATTTCTTTCCTAGGTTC CATGTGTGCTTGTTGATTTCTTTCCTAGGTTTCCATGTGTGCTTGTTGATTTCTTTCTTAGGTT CCATGTGTGCTTGTTGATTTCTTTCCTAGGTTCCATGTGTGCTTGTTTGTTTATTTCCTTGGTT CCATGCGTGCTTGATTATTTTTTTTCTTGTGTGCTTGTTTTTTTCTTTTTATCTCCATGGTTAC TTGATTTGCTGTTACTTCTTTGCTTTCTTTCTTTGTTCCATGCATGCTTGTGTGTTTCATTCTC TGTTTCCTTGCGTGCATGTTTAACTTCTTGCTTTTGGTTCTTACTTGCTTCCTTGTTTTCGTCT TTCAATCCTTACTAGCCTCTTCCTTCCTTGCTTGTTTTCTCACTTGCTCCTTTATTACATGCTT ACTTAATTTCTTTACCTACTGAACTTGTTTGACCTTTTTACTTCATTTTCTTAATCTTCTTCCT TGCTCTAGCTTGTTTCTCTGTTGAATTTTATTTAGATAGTTCTAGGTCTCTGTTTGACAATAGT ATAGATGGCAGACTATTGAGCGTCTATCAACGGTTTCACACGATTCCAGTTATACAATATTGGA GGTCTATGATCATTCTTCTCTCTTTACGTCCTCGTTGATCAGGTGATTGTGGGGCTTTTATATG TATATGTTCATGGGTTATACTAATATACAAGGTGATCTCATTTGTACATTTGCAGATTTTAATT TCGTTTGCAATTTCTTGCAACCAGTTTCTGAAGCAAGAGCCTCATGAATTCCTGGGGACCATGA AACAAGGTACTCCTTTTTTTTTGTAAGTCCCTCTTTGAAGATATTTATTCATTTGTATTTCTTC TTTTCTCTAATCTTTATCAAATCCGTATTTCTCATCATTCTGATTTTTTTTTTTGTTTTTGCCT TTCTTCTATGGCATTGGGATTTACAAGAGGGAACCCTACTTTTAAAAGGAAAGAAACATTGGCA ATTCTCATCTCTGGATTTCTAGCAAATTTGTTTTTCTTATCATACTGATTTTGGTTTTTCTTCC TTTCTTCTGTGGTATTGAGGGTTTTGTTCTTCCGCTGGATTACGAGAGGGCACTCAAGTTTTCA AAGGTATGAAATCAAGCCTAGAATTTTTACTCTTAATTGAATTCAATCGTTGTTCTGTTTTGGT TTTGCATCTTCTTTATCCATAATTACAGAGGCGAATGAAAAGATTTAAGTGTTTTCGGTGAGAC AGAATGGCTTCACATTATTGTAAGTCTTGTAATTTTTAATTATGTATGTGTTCATGTGTGCACA CATACATGCCTTATATGTTTATTAGAATGCAGGTTTTGACTGGTTAGCGTCATAAAGGTAATAG TATTGGTCATCGTGATATGTCATTAGAATTTGATGCTTCTCTGAGCTATGTCATTTGTTTAACT GTTACTAGTTAAAATGCATGACTGAGGTTTGATAATTGGTATTATTATTATGTTTTTGCTTTGC ATGGACTTTAGGTATAGAATATTTGGTGAAAAACTCTCGCGGTTATTTTTTTTATTATGTTAGC ATTCGGTTTTTCAGGAGTACGTTGATGAAGTTTGCGCCTGAATGGGAAGAATAATTTCTCACAT CCAATGTGTGATGGCTGCTATAGTTATGAGACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.152028004

Conservation Information
Conserved circRNAs	NA
PMCS	0.152028004

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.8

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