Detail information of BGIOSGA021014_circ_g.2


General Information
CircRNA Name BGIOSGA021014_circ_g.2
ID in PlantcircBase osi_circ_016351
Alias Chr06:22350791_22351421(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 22678540-22679171  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA021014
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021014_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA021014-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGGCCTCGAGCAATGGAGTTCATGACATCAATGGTTGATATCCCTGTTTGGATCATCTCTT
CTGGATAGGTTCTTTCACTGGGATTAATTGAACTTCccagattcagaaaaagggtgacccgctc
cattgacccgttctcttcaaaatcacgtttgaagaattgggctgtttccatattcactcccata
gcagcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGATTCAGAAAAAGGGTGACCCGCTCCATTGACCCGTTCTCTTCAAAATCACGTTTGAAGAA
TTGGGCTGTTTCCATATTCACTCCCATAGCAGCAAACACGATAGCAAAGTTGTCATCTTCACCA
CCCTGGAGATTAAAAGTAATCAGCAAATAAGCAGTGATTCAGCGATGCAAAAATGTCTCCATGG
AAAAAAATGAACAGGTAAATTGCTCTACAGCATACCATATGGATTTTTCTCCATAAAAATTCAA
AAACTATAATGCCAACATCCAATCATTGTCAAAAGAACAGGATGTTCAAATCAAGAACTTATGT
AGGATTCCATGTACAACTAAAGTTATTAAGCTATATATGTGAGCCCAAATCTCACTGGGTCATC
AAATAGTCAGATTATCTTTATGTGAGAGAAATGCTTGGCTACCTCTGCATGCTTGCCTTTCTCC
AAGCTTTTCACAAGGCCAGCCTGACGACAAATTTGGGCAGCAATTTCATTATGAGGAAGACCAG
CAGCAGAAAAGAGGGGAATCTTTTGGCCTCGAGCAATGGAGTTCATGACATCAATGGTTGATAT
CCCTGTTTGGATCATCTCTTCTGGATAGGTTCTTTCACTGGGATTAATTGAACTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021