Detail information of AT2G31270_circ_g.2


General Information
CircRNA Name AT2G31270_circ_g.2
ID in PlantcircBase ath_circ_015851
Alias 2:13329457-13331193
Organism Arabidpsis thaliana
Position chr2: 13329457-13331193  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G31270
Parent gene annotation CDT1-like protein a, chloroplastic
Parent gene strand +
Alternative splicing AT2G31270_circ_g.1
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G31270.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCATCCATTACTTAATTCAATCGATAAGGCGTTGGGTTATCACAAAAGAAGAGCTTGTGCACA
AGATCATTGCCGGTCACTCTGATATTACTGACAGAAgtacgagaatctgggaaagttctttgaa
gcattggataattcgatgttgttatcgaaattaagaggttctaagccaacattctccaacattt
ctaaacaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1199
Transcript exons: 13329457-13329576,13329905-13330139,13330224-13330865,13
330992-13331193
GTACGAGAATCTGGGAAAGTTCTTTGAAGCATTGGATAATTCGATGTTGTTATCGAAATTAAGA
GGTTCTAAGCCAACATTCTCCAACATTTCTAAACAAATCGAGCATTTAACCGAGAGGAGGTTTT
GTTATAGTCACTTGGCTCAAATAAAGCATATATTGCCTGAAGCGATTGAGATTAAGAGAGTATT
GATACATGATGAAACTACTTGCTGTATGAAACCGGACCTTCATGTTACGCTCAATGCCGATGCT
GTTGAATACAACGACAAGTCGAAATCGGAAAGTAAGAAAATCGCTCTTCGGAAAGTGTTTCGGG
CTAGACTTGCGGATTTTGTTAAAGCTCACCCTCAGGGTGATGAAGTTCCAGAGGAACCGCTTCC
TGAGCCCTTCAATAGAAGGAAACCAGTTGAAAACTCAAATGTTGAAGTCAAGCGTGTTAGTTCT
CTCATGGAAGAGATGGCTTCTATTCCAGCATCTAAATTGTTTTCATCTCCCATCACATCAACGC
CAGTCAAAACAACTTCAAGTCTGGCTAAACCAACTTCGTCTCAGATTAACATTGCTCCAACTCC
AACCAAACCAACTTCAACTCCTGCTAAACAGACTTTGTCTGAGATTAATATATTGCCAACTCCA
GTCAAACCAGTGTCAACTCTGGCTAAGTTTCCTTCAACACCGGCGATTATTGACTCAACACCAG
TCATTACTGCAACTCCACCTGAATTTGCTTCAACTCCTGCCCGGCTGATGAGTACTTCTCTGGC
AGCTCGTCCGCTGAAAAGAAGCAACGGTCATACAAATCCAGATGATATTTCTGCTGACCCACCG
ACTAAGCTCGTGAGGCGTTCCTTGTCTCTGAACTTTGATTCTTATCCTGAGGATGAGAGAACTA
TGGATTTCACAGATGATATACCCATTGATCAAGTACCAGAAGAAGATGTATCCAGCGATGATGA
AATACTCAGCATACTTCCTGATAAACTTCGACATGCGATAAAAGAACAAGAGAGGAAAGCGATT
GAGGATCAAAATCCAGCAATCTCTCTGGCAAAAAGAAGGCGAAAGATGATCGCTTGTCTACCTA
AACTTTTCAATGTCATCCATTACTTAATTCAATCGATAAGGCGTTGGGTTATCACAAAAGAAGA
GCTTGTGCACAAGATCATTGCCGGTCACTCTGATATTACTGACAGAA

Genomic sequence GTACGAGAATCTGGGAAAGTTCTTTGAAGCATTGGATAATTCGATGTTGTTATCGAAATTAAGA
GGTTCTAAGCCAACATTCTCCAACATTTCTAAACAAATCGAGCATTTAACCGAGAGGTAGTCTT
CCTGACATTTCAATTTGAATCGTGTTTGTGATTGTCACTGATTGGATCTGATCTGAATAAATAA
GCCAAATTTGGTTATTGCCTTTAAACTTTATAGAGTCGATAAGACAAATTAATAATCTAGATCG
TGTTTATGGGATCTGATCTGAATAAATAAACCATTTTGATCTTTGCTTTTTATACTTTATAGGT
TCGATGAGACAAAAGAATACTTTAGATCTGGGTTTTATAGATTTCTCCGATAACTTTTCTAGAT
TTTAGATATTCACGAGTCTGTTTCTGGTGTGTTTATATAATTCTTGTGTGGATGTATATTTCAG
GAGGTTTTGTTATAGTCACTTGGCTCAAATAAAGCATATATTGCCTGAAGCGATTGAGATTAAG
AGAGTATTGATACATGATGAAACTACTTGCTGTATGAAACCGGACCTTCATGTTACGCTCAATG
CCGATGCTGTTGAATACAACGACAAGTCGAAATCGGAAAGTAAGAAAATCGCTCTTCGGAAAGT
GTTTCGGGCTAGACTTGCGGATTTTGTTAAAGCTCACCCTCAGGTATAATGCCCTATCTATTTT
AGTGATTTTGGAAGTTGCATTGTGATTTTATTCAAGTACTAATGGTGTTATTCTCTGTTTTAGG
GTGATGAAGTTCCAGAGGAACCGCTTCCTGAGCCCTTCAATAGAAGGAAACCAGTTGAAAACTC
AAATGTTGAAGTCAAGCGTGTTAGTTCTCTCATGGAAGAGATGGCTTCTATTCCAGCATCTAAA
TTGTTTTCATCTCCCATCACATCAACGCCAGTCAAAACAACTTCAAGTCTGGCTAAACCAACTT
CGTCTCAGATTAACATTGCTCCAACTCCAACCAAACCAACTTCAACTCCTGCTAAACAGACTTT
GTCTGAGATTAATATATTGCCAACTCCAGTCAAACCAGTGTCAACTCTGGCTAAGTTTCCTTCA
ACACCGGCGATTATTGACTCAACACCAGTCATTACTGCAACTCCACCTGAATTTGCTTCAACTC
CTGCCCGGCTGATGAGTACTTCTCTGGCAGCTCGTCCGCTGAAAAGAAGCAACGGTCATACAAA
TCCAGATGATATTTCTGCTGACCCACCGACTAAGCTCGTGAGGCGTTCCTTGTCTCTGAACTTT
GATTCTTATCCTGAGGATGAGAGAACTATGGATTTCACAGATGATATACCCATTGATCAAGTAC
CAGAAGAAGATGTATCCAGCGATGATGAAATACTCAGCATACTTCCTGATAAACTTCGACATGC
GGTAATACATCTCTATTAGTGATTCCTTTTCTTCTCGTAATTTTGCTTTATACTTTTCAGTTTG
AGATTAAGAAGTACAAACTGAGATTGGCTTTACTTACTGAGATTGTTTTTTTGCTCATTTCAGA
TAAAAGAACAAGAGAGGAAAGCGATTGAGGATCAAAATCCAGCAATCTCTCTGGCAAAAAGAAG
GCGAAAGATGATCGCTTGTCTACCTAAACTTTTCAATGTCATCCATTACTTAATTCAATCGATA
AGGCGTTGGGTTATCACAAAAGAAGAGCTTGTGCACAAGATCATTGCCGGTCACTCTGATATTA
CTGACAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.176739734
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR2933b
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020