Detail information of Zm00001d029394_circ_g.1


General Information
CircRNA Name Zm00001d029394_circ_g.1
ID in PlantcircBase zma_circ_000651
Alias circ161
Organism Zea mays
Position chr1: 68807379-68807808  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d029394
Parent gene annotation Histone H3
Parent gene strand +
Alternative splicing NA
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d029394_T002:3
Zm00001d029394_T003:3
Zm00001d029394_T001:2
Zm00001d029394_T004:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTATCAGTGAGATCCGCAAGTATCAGAAGAGCACTGAGCTGCTGATCAGGAAGCTGCCCTTC
CAGAGGCTCGTCAGGGAAATTGCACAGGACTTCAAAgatggctcgtaccaagcagactgctcgc
aagtccacgggagggaaggctcccaggaagcagcttgccaccaaggtaaggttctttagataat
ggtaccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGGCTCGTACCAAGCAGACTGCTCGCAAGTCCACGGGAGGGAAGGCTCCCAGGAAGCAGCTT
GCCACCAAGGTAAGGTTCTTTAGATAATGGTACCATATTGTCCTTAATTTGTTTTTTTTGATTT
GACCCTGATATTGGATCAAGATATGACTGAATTTGCCCTTTTGGCTATTCATATATAGGCTGCC
CGTAAGTCTGCCCCCACCACTGGTGGAGTGAAGAAGCCTCACCGCTACCGCCCTGGAACTGTTG
CCCTCCGGTGAGTAGAACATCATTGGATTCTTCCGTTGAATATGCTGTTATGCTGCACTACTGA
CATGAATGTAATTTATCAGTGAGATCCGCAAGTATCAGAAGAGCACTGAGCTGCTGATCAGGAA
GCTGCCCTTCCAGAGGCTCGTCAGGGAAATTGCACAGGACTTCAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.163334186
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b