Detail information of AT2G05590_circ_g.1


General Information
CircRNA Name AT2G05590_circ_g.1
ID in PlantcircBase ath_circ_012886
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2068158-2068822  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT2G05590
Parent gene annotation Putative uncharacterized protein At2g05590
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05590.1:3
AT2G05590.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTACATGAACTAGGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGAATGTTTG
GCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGggtacaagccagacattcttgttcacaa
ctatttatggtgaaccacgcatatttagacctaccggtaatcatttgaaccccttcttttatta
tttacttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG
GTAATCATTTGAACCCCTTCTTTTATTATTTACTTCTCAAGAAATCGCGTATAGTTAGCTAATG
GATTTATGGGAGGAAGAGTATAGAGAAAATTGAAGAGAATTCTTAAGTCTCTTCAAAATCAGAT
CTTAAGAATAAGAACATTTGGTTGCAGCTGGTTTTTATCCTAATCCTTCTTGGTTCTTGTTATC
AAGACTTGATCCACACTTGTTTTAGTTAGTTGTATTGTTGATATAAACCATCTAGTGAAAGAAG
AGTAACTTGTTTAGGAGAAGTTGACATCCACTCAAGTATGTGTACTTAACTCAGGTACCTCTCT
CATGAATTTGTGCGCAGGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTT
GGAGGTGGAGGAAACTTTGCACTATGTTTAGACGAAGATTTGTAAGGCACAATTTGGCTCAATC
TCATTTAGAAAATTTCCCATTTTAATCGTTTTGATGATACTCAAACCAAACTTTGCTACATGAA
CTAGGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGAATGTTTGGCTAGCAGCAC
GGAGTTTGAGTTAAAGAATGTCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.141481755
Functional Information
Coding potential Y
Potential coding position 2068579-2068819(+)
Potential amino acid sequence MCMNEFLAFGGGGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVEGTSQTFLFTTIYG
EPRIFRPTGANRYYLMCMNEFLAFGGGGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKN
VEGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNEFLAFGGGGNFALCLDEDLLKATSGPSETF
GNECLASSTEFELKNVEGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNEFLAFGGGGNFALCL
DEDLLKATSGPSETFGNECLASSTEFELKNVE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017