Detail information of Zm00001d013159_circ_g.1


General Information
CircRNA Name Zm00001d013159_circ_g.1
ID in PlantcircBase zma_circ_004783
Alias seedlingd_test_circ_000678
Organism Zea mays
Position chr5: 5560585-5560732  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d013159
Parent gene annotation alpha tubulin3
Parent gene strand -
Alternative splicing Zm00001d013159_circ_g.2 Zm00001d013159_circ_g.3 Zm00001d013159_circ_g.4 Zm00001d013159_circ_g.5
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d013159_T003:1
Zm00001d013159_T004:1
Zm00001d013159_T002:1
Zm00001d013159_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTCCTCCTCGTCACCGTCATCACTGCCGCCCTCTGCGGCGACCTCCTCGTAGTCCTTCTCCA
GGGCGGCCAGggacacaaacaaaggtttttcaacaccacaacctggctcgacagccaaacagat
tcatgcaagcagatcagtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACACAAACAAAGGTTTTTCAACACCACAACCTGGCTCGACAGCCAAACAGATTCATGCAAGC
AGATCAGTATTCCTCCTCCTCGTCACCGTCATCACTGCCGCCCTCTGCGGCGACCTCCTCGTAG
TCCTTCTCCAGGGCGGCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.388352928
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018