Detail information of BGIOSGA014772_circ_g.2


General Information
CircRNA Name BGIOSGA014772_circ_g.2
ID in PlantcircBase osi_circ_014540
Alias Chr04:25687390_25690925(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23785353-23788891  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA014772
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014772_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014772-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGATGGTCAACATAAAGGTGTTACCTGATAAATGTTTCATATCAGAATCTGTGATGCCATTAC
AATACCTCAAATTTAGCTTTTCCAGTTTTCTCAAGCcatgtaagagctgccaaaccattatctg
tgatttggcgattatcaagattaagggatctgagtgaattcaggccagaaattttcttcaagcc
aatgtccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTAAGAGCTGCCAAACCATTATCTGTGATTTGGCGATTATCAAGATTAAGGGATCTGAGTG
AATTCAGGCCAGAAATTTTCTTCAAGCCAATGTCCGTAACCAATGTAAAAGAGAGATTGATGCT
CTGCAAATTCCGTAGGCCTGAGGAGATATATTAGTTGAAGAACTGTTGTGAGTAATAACTAAAA
ACTGAAACCGCTTGAACTATTCAAACATCATATATTTTTTTAAAAAAAAATAAAGTCAATGGCA
CTAGCATTTGTGCAGAAGATTAAACAAACCAGAGAGATGACGAAGTCCATTGCTCCCAACTTCT
GTGTCTGAAAGTTCCAAGCTTCTTAGTTTCAGAAGTCCTACAGCACAGAGAGATGTACACCAAT
GATTTGAGACCCCCAAAAAAAAGAATGTAACCAGTAATACAAACAATTAAACCAATTAAGAATT
CCATAAGGAACAAAGTATACTTAGTCAATGCTAAACTGACAATTGCAGACTAGTCTGGTAAAAA
GCAGTAATACTATATGCCATTAAACAAAAGTAAACTACGACTTACTGCATGAGGCTTATTGTGT
GATTCTCCGCCTTCAGTGTTTTATGAAATACTAGCAAAATGCCAGTATTTTAAAGCCCATAAAA
AGTTATTCCTATTGTCTAATATATTGTCATCATGCAACTTATGTTGTCACTTTCTAGCTTTGTG
CCTGATAAGCTAGCTGTAGAAATAGGCAAAGTCTTATTTCACTGTTGGTGGGTCCCACACTACC
ATCTTTCGTATAAGTATAGACAAGATAACAGGAAAAACAAAGAAAAGACATGACAACTAAGAAA
CTCACCTTTCAAATGTGCTAGCCCCTCGTCACCAATCTTGCATGAGTCCAAGTTCAAACACTCC
AAATTGATCAGTTCTACAAGAACAGAAGAACATCAGGAAAGCTCCCCACTTCATGTGTTAATTA
GCATATATAGTATATAATGATGTCAGACTTCTGACATGTTTCCAGAAAAATCAATACAATCAAG
TGGGTACACCTTCCACTTGGTGCGGCGTAAACATATATATTGAACAAAAACGACATGGCAAAAG
TGAAACAAAAGCGTATTCTGGTATGCATCTAGTCTCATATCATCGGCAATTTTAATGACAGAAA
CAAGAGAATACTGGTATATTAAGAAAATATAAGTGTTATTTCTTGAGTAATAGTGATCAAATTC
TATGGATTTTCACAGCAGTGCTTTACCAAATTTCAGGACTCACTTGTCACTTAGATCACAGCGC
TTCAAATTTGGATGCTAGAATGCTAATTTTTAAACATTATTCTACATTGATGTCAAATATCATA
TGAAGATAAATAATGAAGAGTCTATTTACCTTTTAGATGAACCAAGCAGGCATCTGTAATATAG
TTGAACCCTAAATTGAGAACCTTCAACTTGACAAGACCTGCAAGGCAAGACCAGCGACAACGCT
AAGAAGAAGTGCAACCATGTATGATGAAGAAACAGAACTTAATATGGACAGCTTACACAACGAG
ACATAAAGTGGCATATGTTCCTATTTGTAGATCACAAAACATCTTAACTATTGTTGAAAAAAAA
TGGTAGGTGAACTGACTAGACGTACACTGAGAATTAACCAATTTATAACTACTTAGTTTGTCAT
CTGCATACAAAGGGCATAATTTCCTATTTGTAGACAAAAAACAATGCGCTCTGCAAATAATAGA
GAATTGTGTTCGCCAAAAAGTCAACGACCAGAGGTTATAATATTACCTTCCAAATGCTCACAGC
CTTCGTCATATACTCCACATCTACTAAGATTCAACAATACCAATGAAGCCAATCCTGTAATAAC
ATCACTATTAATGAAAACTTTTTTGAGAATACGCACAAAAGCCTTGTGCATCTTTTGTATTAAG
AGAAGGGGAGTTTTTAAAACTTTACAATCTTCCGCTGAAAGGAAAACAAGCAAATGAAAAGAAA
GAAAACACAAAAGGCGTGGGGCTATATCTCGCAACAAGTTTGGCAACCGTTTAGTGAGCGGTGG
CTCAGATGGGCAGGCCAGCCACACGCCAGACCGCTGCTTCTTCCTCCATGGCCGCGCTTATTAC
CCCCCCCCCCCCCCCCCCCGATTTCCTCTCGTTGTTGAACACCTTATTGTTTCTATTAATGAAA
ATATGATCTCACCAAACAGGGAGCTTGTTAAGTGTTCATGTAATCATGAAATAGATTAACATCA
AAGAGCAGTACACCAGAGTTGTCAAACATACTGTACGCTGAGTACAGAGAAATATCTTAGGCAA
CTAAAGAGTTCTATAAACCAGCATTCTAATCGCTAGCTGCGCAACAGTAATATGGTAAGCTTAC
GCTTCACAGAGAAATATAGGACTGAAAAAAGAAGAAGAAAATGTGCCTTAAGTTAACAATGAAT
TTCCTTTGAAAATAATAAAATGAAATTCCATTACCACCTATAAGCACCAAAAGTAATAAAAAAA
TCTCTCATTTACAAGAAGCAGCATAATAGTCCTATAGTACTTCCTCCGTTTCACAATGTAAGTC
ATTCTAGTATTTCCCACATTCATGTTGATGTTAATGAATCTAGATAAATATATATGTCTAGATT
CATTAACATCAATATGAATATGGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGGAGTAG
AAGCAAGACACTCTCAAGTTACCTAGCCACTTTGTCATTCTCATTCAACTTGCAAAGGGAATTT
CTAAAACTTTCATGTCAAATCCACCAGAAGAGATTTCTCTGGGGATAAATCCATGAGGTAGTTG
ACTATATATAGAATGAGAACCAAAAGAAATGTGTGAAATTTCATGACATGCACTTCTTCAGGTC
CCTAAATATCCATTTTTGGTAATGAATTTAATGGATTATTCTACATGAGTTCTGGCAGATGTGG
CACCCTTTCAACAGTCAAATTAAATTACCCCAAGGACTTCCCTAGAATAAATGTAAGACATTTT
CATGGAAGCGTGAACTGATAACATAGCACTCGTATGGAAAAGATGCAAAACCTGAAATAACCTC
CAAACAAGCAGCAGTTACTGCACAGCCCTCCAGGTTTAGGTGAGCTAGCTTCGATAGACCTGTA
AAGAACAAATACGAAATATGAAACAGAGGCTAACTTTAGATGAAACTTCATGTCATTATATTAA
TAGAAACAACGAATTAATCAGAATATTACAGATACAAATGGATGTAGCTTTAGGTAGATAAGGT
TCCACTGGAAAAGGAAGAAATTTATTTCTGGGATACCTCTTAGATAAGAAACACCAAGATCACT
TATTTTGCAGCAAGAAAGTTGGAGCTCTCTCAAATTTGTAAGATCTACAAGGAAAAGGGTATTT
ATTAGACGTGCAGATCAGTATGTGTGATAACATACACTGCTTGACACTAGATGGTCAACATAAA
GGTGTTACCTGATAAATGTTTCATATCAGAATCTGTGATGCCATTACAATACCTCAAATTTAGC
TTTTCCAGTTTTCTCAAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021