Detail information of BGIOSGA017983_circ_g.3


General Information
CircRNA Name BGIOSGA017983_circ_g.3
ID in PlantcircBase osi_circ_006268
Alias 5:22711281|22713188
Organism Oryza sativa ssp. indica
Position chr5: 22711281-22713188  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA017983
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA017983_circ_g.1 BGIOSGA017983_circ_g.2 BGIOSGA017983_circ_g.4 BGIOSGA017983_circ_g.5 BGIOSGA017983_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA017983-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATTGAGAAAAATAAATAAATTTCAACTAAGACTAGTCATGGGTCATACTTTGAATATTGAAT
GTCTAGCTGGCAGCAACCGTCATATATGTTCCTTCCcttcagataatgcacagctagctcagcc
tgaaacccatcagccatttcaacaagggcgtgatctggtttgttgcgcagtattttgattcgga
ctatgttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAGATAATGCACAGCTAGCTCAGCCTGAAACCCATCAGCCATTTCAACAAGGGCGTGATCT
GGTTTGTTGCGCAGTATTTTGATTCGGACTATGTTCCCATATAGAGAGAACAGATTGAAAAGCT
TATCTTCATTTATTTTCTGCAAGGCAGATGAGTTAAGAACTAAGATGCCAAGGTTTAAGGCCAG
TAACATCTTGCACAAAAGCTTTGAATACCTTATAAGTTGGCATATCAGGCTTAAACTACTCTTG
CCAAACGACCACTTTGGTTCGTTGAGTTTTCACTAAAGGATCAGTCTGGTAGCTACAATTTTCT
AAAAAATGACAAAGATCCTCACTATTCAAAACTCTGGCCAAAGAATGGCCCAATCCTAATATTC
ATGCCAACAGCCTGCTAGCTTCAATCGTACTCAAGAACCTCTCTACATGATGAGGGAAGTGAAG
TCTCTTGACGAGCACCCCACTAACACACCCCACTAGAGCCATGCATCTTTGATGCTTCCTTTCT
AAGGGCTGCAGAGAGCAAAATGAGCATGTAGCATTCTGCATTCATTTGCTAACCATCTTATGGG
GCCTGACTAGAGAGAGGGATGAATGCTTGTATCAGCACCTTCACCTATATTTGACCCTATCATA
ACATAACAGATAGGCAACAAGCAGCTGTTTTATTCCAGTTTGGCCATGAATTGTTGACTTACTG
ATGATTTCATTGACTGGGATGGCTCACATAGGTAAACACAATTATACGACTTACTGTCACTCTA
CTTGATCTCCACCTAGCCGAGTAGGACCCAATCCACAAGTGTAGTTGGCATAACAACTTTGATT
AGGTCCTCTGGTTTTATGTTCAAAACATCAGGGCCCTCATTGGACTTCTTTAACACCAAGGACC
AAAGCTACCTTTTAGCAAAAACTCAGGGACCAAAGTGTTCAATTCAAACAGCTTAAGCTTAGAA
GTTTATGAATAATGAATATAAGTGGTAAGGTTAAGGTAGTCTTGAACGATACAGAACAGATGGA
GACTTACATCAGTGTTCAAATTACTGACTATTAGCGTGCAACGTTCGTTGGTACCAGTCACCCC
GGGAGGTAAAGTTCCACCGAATGCAGCTGTGATCATTGCAGCTCTTCCCATCTGAATGAATCAA
ATGCAAATGTTTTTTTATGAGAACTTATAGGGTTATTATCCATCTGCATTTTCCACAAAGTGAA
AGACATATCACTGGAGACTAACCTGTGCATATGAAGCTGCACACACAAAAGGAAATTAAATCAG
GAACTTTTGCAAATATCAACAATAAATATTTGATTCAAACAAAATTGAAGTGTGCTACCTCCTG
GTTGTTGGAAGGCATAAAGACCACCTGGATCTGGATAGCCTTGCTGCTTCAATAATTTTCAAAT
AATAAAATTCTCTATTTAGTTTCAGAGCAAAAATGGGTCCATGAAACAAGTGATGTGATAACAA
AAAGAACATAAGCACACTCTAACCTGAGAGGCCCTTGGACGCTGTTCTGTAGGCAATGATGGGT
TTGTGAAATCCCTGTATAAAGGATACAATTGAGAGAAGGCAACAAGATGATTAAAAAAAAGTCA
AAAGAAAGGAGGAGTTGTGAACTGAAGTTTAATTGTACTATAACTTTTAAAGGCAAGTACAACT
CCCTAAAAATTATTGATGCTTACAAATTGTCCAATAATGTCATTTGTAAGTACTAAGGATGAGA
GGTTAATTTTACCTAGAACGATCATTGTTGTAATGGACTTGCAGTTCGCTTAGACTGAAATACA
AGGAAACAAGAAAATAAGATTGAGAAAAATAAATAAATTTCAACTAAGACTAGTCATGGGTCAT
ACTTTGAATATTGAATGTCTAGCTGGCAGCAACCGTCATATATGTTCCTTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 22712421-22711283(-)
Potential amino acid sequence MGRAAMITAAFGGTLPPGVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNIVRIKILRNKPD
HALVEMADGFQAELAVHYLKGRNIYDGCCQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRP
RASQQGYPDPGGLYAFQQPGASYAQMGRAAMITAAFGGTLPPGVTGTNERCTLIVSNLNTDKIN
EDKLFNLFSLYGNIVRIKILRNKPDHALVEMADGFQAELAVHYLKGRNIYDGCCQLDIQYSNLS
ELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQMGRAAMITAAFGGT
LPPGVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNIVRIKILRNKPDHALVEMADGFQAEL
AVHYLKGRNIYDGCCQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLY
AFQQPGASYAQMGRAAMITAAFGGTLPPGVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNI
VRIKILRNKPDHALVEMADGFQAELAVHYLK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021