Plant Circular RNA Database

Detail information of Os03g0831500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0831500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_022567
					
						Alias
						Os_ciR2983
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 34924612-34926155  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os03g0831500						
					
						Parent gene annotation
						
							Similar to Phosphoribosylformylglycinamidine cyclo-ligase, chlor
oplast/mitochondrial precursor (EC 6.3.3.1) (AIRS) (Phosphoribos
yl-aminoimidazole synthetase) (AIR synthase) (VUpur5). (Os03t083
1500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0831500_circ_g.3 						
					
						Support reads
						4/3
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0831500-01:6

General Information
CircRNA Name	Os03g0831500_circ_g.2
ID in PlantcircBase	osa_circ_022567
Alias	Os_ciR2983
Organism	Oryza sativa
Position	chr3: 34924612-34926155 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os03g0831500
Parent gene annotation	Similar to Phosphoribosylformylglycinamidine cyclo-ligase, chlor oplast/mitochondrial precursor (EC 6.3.3.1) (AIRS) (Phosphoribos yl-aminoimidazole synthetase) (AIR synthase) (VUpur5). (Os03t083 1500-01)
Parent gene strand	-
Alternative splicing	Os03g0831500_circ_g.3
Support reads	4/3
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0831500-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATACCAGATCAATCCCAATTGTGTCATGGATACCAGTTTCAAACGCAAGCTTGAGCTTCGTCC
CGACTCCATCGGTTCCAGCAACAAGAAATTGGTCACctcttgaatccacctgaatacaggtggc
acttcccatgctgcagtaaaaatctttgccccaagtccagaaggaaatactcttgggatattat
cggtgaag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 701
Transcript exons: 34924612-34924770,34924849-34924960,34925107-34925279,34
925695-34925754,34925875-34925976,34926061-34926155
CTCTTGAATCCACCTGAATACAGGTGGCACTTCCCATGCTGCAGTAAAAATCTTTGCCCCAAGT
CCAGAAGGAAATACTCTTGGGATATTATCGGTGAAGCCACCACCAGTAATATGGGCTATTCCTT
TTACACCACCCTTGTTAATAATCTCGAGCACCTGCTTAACATAGATAACAGTTGGTGCCATGAG
AGCTTCACCAACAGTAGTTATCATGCCATCATTTCTGGGGAGCTGGTCATTCAACGAAAGTCCA
CTTTTCTCCAGTACTCTTCTAGCAAGGGAGAACCCGTTAGAATGAACCCCACTAGAAGGAAGAC
CAATGATGATATCTCCCTCCATGATATTTTTACCATCGATGACCTTATCCTTCTTAACAGCACC
CACAGCAAAGCCACTTAGATCATATTCACCTTCTTTATAGAAATCAGGCATTTCTGCTGTCTCT
CCTCCTAGCAGAGCACAATCTGATTGCCGGCATCCATCGACAATCCCCTTGATAACCTTCTCTG
CTAGATCAACGTCGAGCTTGCTCGTAGCATAGTAGTCTAGGAAGAACAGTGGTTTTGCACCCGA
AGTCACAATGTCATTAACACTCATAGCCACCAGATCAATCCCAATTGTGTCATGGATACCAGTT
TCAAACGCAAGCTTGAGCTTCGTCCCGACTCCATCGGTTCCAGCAACAAGAAATTGGTCAC
						
					

						Genomic sequence
						
							CTCTTGAATCCACCTGAATACAGGTGGCACTTCCCATGCTGCAGTAAAAATCTTTGCCCCAAGT
CCAGAAGGAAATACTCTTGGGATATTATCGGTGAAGCCACCACCAGTAATATGGGCTATTCCTT
TTACACCACCCTTGTTAATAATCTCGAGCACCTTTTCATTTTCAACAATTTAATTAGAAACTTG
CATATACATATATGCTAAATATGAAACATATATCAGCAAAGCTACCTGCTTAACATAGATAACA
GTTGGTGCCATGAGAGCTTCACCAACAGTAGTTATCATGCCATCATTTCTGGGGAGCTGGTCAT
TCAACGAAAGTCCACTTTTCTCCAGTACTCTAAAAAAATATGAAATTTTGTAGGTACCATTAAT
GACACATAATTCAACAGGAGGACGGGTTGTCAAGTATCAACATCAAAAGAAAAGAGCATGCGTC
AACCATCTATTTGGATCAAAACAACTCGAATTGGATAGATGCAATACCTTCTAGCAAGGGAGAA
CCCGTTAGAATGAACCCCACTAGAAGGAAGACCAATGATGATATCTCCCTCCATGATATTTTTA
CCATCGATGACCTTATCCTTCTTAACAGCACCCACAGCAAAGCCACTTAGATCATATTCACCTT
CTTTATAGAAATCAGGCATTTCTGCTGTCTGCATGACAAATGGATCAATGATAAATGCAATTGT
TTTTTATTAGTATGTTGCTGCACATAACAGAGTCAAAACATTATGTTAACTTTGTACTTATGCT
CATATATCATAGTTAAGTATTCTCAAAGCATTTACAAACCAAAGTATGATGAAAAACAAGATCC
ACCATGTGAACTAAGCTGAATACCATATCAACATTTACAAAGATTCACTTGTTGAAGCTAGTGC
TTGCTAGTTAGAAAATGGTCTAATGATCAGTCTGTAAGCATAATTGAAAATTTATTCGTATGAA
GTAAAGTAGTCACAAACCATTGCAAGACAGATGAACAATTATGATACATATATTCTGTATTCAT
TGGTACAAAGATTGAAGTATTCCACTGCTAAAACATGGGTTCTAGTTAGGGAACTTCACCTCTC
CTCCTAGCAGAGCACAATCTGATTGCCGGCATCCATCGACAATCCCCTTGATAACCTATGTAGT
TGAGAAAATAAAAGTTTTGAACAGAATAATTATGACTTTATAAGCAGATGTAGATAAGAGAGGA
TTAGCCGGCATAACTGTTTTCAGCAAACAAAATAGCGTCAACAATACCTTCTCTGCTAGATCAA
CGTCGAGCTTGCTCGTAGCATAGTAGTCTAGGAAGAACAGTGGTTTTGCACCCGAAGTCACAAT
GTCATTAACACTCATAGCCACCTAACATGAGAATTAAAAATCATTTGAGTCAATCAAACTCAAA
GGGATGAAATAAAATACTCATCTAGCAAAGTGAACACATACCAGATCAATCCCAATTGTGTCAT
GGATACCAGTTTCAAACGCAAGCTTGAGCTTCGTCCCGACTCCATCGGTTCCAGCAACAAGAAA
TTGGTCAC
						
					

			
		

Sequences
Splice junction sequence	CATACCAGATCAATCCCAATTGTGTCATGGATACCAGTTTCAAACGCAAGCTTGAGCTTCGTCC CGACTCCATCGGTTCCAGCAACAAGAAATTGGTCACctcttgaatccacctgaatacaggtggc acttcccatgctgcagtaaaaatctttgccccaagtccagaaggaaatactcttgggatattat cggtgaag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 701 Transcript exons: 34924612-34924770,34924849-34924960,34925107-34925279,34 925695-34925754,34925875-34925976,34926061-34926155 CTCTTGAATCCACCTGAATACAGGTGGCACTTCCCATGCTGCAGTAAAAATCTTTGCCCCAAGT CCAGAAGGAAATACTCTTGGGATATTATCGGTGAAGCCACCACCAGTAATATGGGCTATTCCTT TTACACCACCCTTGTTAATAATCTCGAGCACCTGCTTAACATAGATAACAGTTGGTGCCATGAG AGCTTCACCAACAGTAGTTATCATGCCATCATTTCTGGGGAGCTGGTCATTCAACGAAAGTCCA CTTTTCTCCAGTACTCTTCTAGCAAGGGAGAACCCGTTAGAATGAACCCCACTAGAAGGAAGAC CAATGATGATATCTCCCTCCATGATATTTTTACCATCGATGACCTTATCCTTCTTAACAGCACC CACAGCAAAGCCACTTAGATCATATTCACCTTCTTTATAGAAATCAGGCATTTCTGCTGTCTCT CCTCCTAGCAGAGCACAATCTGATTGCCGGCATCCATCGACAATCCCCTTGATAACCTTCTCTG CTAGATCAACGTCGAGCTTGCTCGTAGCATAGTAGTCTAGGAAGAACAGTGGTTTTGCACCCGA AGTCACAATGTCATTAACACTCATAGCCACCAGATCAATCCCAATTGTGTCATGGATACCAGTT TCAAACGCAAGCTTGAGCTTCGTCCCGACTCCATCGGTTCCAGCAACAAGAAATTGGTCAC
Genomic sequence	CTCTTGAATCCACCTGAATACAGGTGGCACTTCCCATGCTGCAGTAAAAATCTTTGCCCCAAGT CCAGAAGGAAATACTCTTGGGATATTATCGGTGAAGCCACCACCAGTAATATGGGCTATTCCTT TTACACCACCCTTGTTAATAATCTCGAGCACCTTTTCATTTTCAACAATTTAATTAGAAACTTG CATATACATATATGCTAAATATGAAACATATATCAGCAAAGCTACCTGCTTAACATAGATAACA GTTGGTGCCATGAGAGCTTCACCAACAGTAGTTATCATGCCATCATTTCTGGGGAGCTGGTCAT TCAACGAAAGTCCACTTTTCTCCAGTACTCTAAAAAAATATGAAATTTTGTAGGTACCATTAAT GACACATAATTCAACAGGAGGACGGGTTGTCAAGTATCAACATCAAAAGAAAAGAGCATGCGTC AACCATCTATTTGGATCAAAACAACTCGAATTGGATAGATGCAATACCTTCTAGCAAGGGAGAA CCCGTTAGAATGAACCCCACTAGAAGGAAGACCAATGATGATATCTCCCTCCATGATATTTTTA CCATCGATGACCTTATCCTTCTTAACAGCACCCACAGCAAAGCCACTTAGATCATATTCACCTT CTTTATAGAAATCAGGCATTTCTGCTGTCTGCATGACAAATGGATCAATGATAAATGCAATTGT TTTTTATTAGTATGTTGCTGCACATAACAGAGTCAAAACATTATGTTAACTTTGTACTTATGCT CATATATCATAGTTAAGTATTCTCAAAGCATTTACAAACCAAAGTATGATGAAAAACAAGATCC ACCATGTGAACTAAGCTGAATACCATATCAACATTTACAAAGATTCACTTGTTGAAGCTAGTGC TTGCTAGTTAGAAAATGGTCTAATGATCAGTCTGTAAGCATAATTGAAAATTTATTCGTATGAA GTAAAGTAGTCACAAACCATTGCAAGACAGATGAACAATTATGATACATATATTCTGTATTCAT TGGTACAAAGATTGAAGTATTCCACTGCTAAAACATGGGTTCTAGTTAGGGAACTTCACCTCTC CTCCTAGCAGAGCACAATCTGATTGCCGGCATCCATCGACAATCCCCTTGATAACCTATGTAGT TGAGAAAATAAAAGTTTTGAACAGAATAATTATGACTTTATAAGCAGATGTAGATAAGAGAGGA TTAGCCGGCATAACTGTTTTCAGCAAACAAAATAGCGTCAACAATACCTTCTCTGCTAGATCAA CGTCGAGCTTGCTCGTAGCATAGTAGTCTAGGAAGAACAGTGGTTTTGCACCCGAAGTCACAAT GTCATTAACACTCATAGCCACCTAACATGAGAATTAAAAATCATTTGAGTCAATCAAACTCAAA GGGATGAAATAAAATACTCATCTAGCAAAGTGAACACATACCAGATCAATCCCAATTGTGTCAT GGATACCAGTTTCAAACGCAAGCTTGAGCTTCGTCCCGACTCCATCGGTTCCAGCAACAAGAAA TTGGTCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.260589929

Conservation Information
Conserved circRNAs	NA
PMCS	0.260589929

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							34926083-34924615(+)
34925955-34924625(+)
34924650-34925969(-)
34925972-34925969(-)
						
						Potential amino acid sequence
						
							MDTSFKRKLELRPDSIGSSNKKLVTS*(+)
MSLTLIATRSIPIVSWIPVSNASLSFVPTPSVPATRNWSPLEST*(+)
MGSATCIQVDSRGDQFLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLD
YYATSKLDVDLAEKVIKGIVDGCRQSDCALLGGETAEMPDFYKEGEYDLSGFAVGAVKKDKVID
GKNIMEGDIIIGLPSSGVHSNGFSLARRVLEKSGLSLNDQLPRNDGMITTVGEALMAPTVIYVK
QVLEIINKGGVKGIAHITGGGFTDNIPRVFPSGLGAKIFTAAWEVPPVFRWIQEVTNFLLLEPM
ESGRSSSLRLKLVSMTQLGLIWWL*(-)
MSVNDIVTSGAKPLFFLDYYATSKLDVDLAEKVIKGIVDGCRQSDCALLGGETAEMPDFYKEGE
YDLSGFAVGAVKKDKVIDGKNIMEGDIIIGLPSSGVHSNGFSLARRVLEKSGLSLNDQLPRNDG
MITTVGEALMAPTVIYVKQVLEIINKGGVKGIAHITGGGFTDNIPRVFPSGLGAKIFTAAWEVP
PVFRWIQEVTNFLLLEPMESGRSSSLRLKLVSMTQLGLIWWL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	34926083-34924615(+) 34925955-34924625(+) 34924650-34925969(-) 34925972-34925969(-)
Potential amino acid sequence	MDTSFKRKLELRPDSIGSSNKKLVTS(+) MSLTLIATRSIPIVSWIPVSNASLSFVPTPSVPATRNWSPLEST(+) MGSATCIQVDSRGDQFLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLD YYATSKLDVDLAEKVIKGIVDGCRQSDCALLGGETAEMPDFYKEGEYDLSGFAVGAVKKDKVID GKNIMEGDIIIGLPSSGVHSNGFSLARRVLEKSGLSLNDQLPRNDGMITTVGEALMAPTVIYVK QVLEIINKGGVKGIAHITGGGFTDNIPRVFPSGLGAKIFTAAWEVPPVFRWIQEVTNFLLLEPM ESGRSSSLRLKLVSMTQLGLIWWL(-) MSVNDIVTSGAKPLFFLDYYATSKLDVDLAEKVIKGIVDGCRQSDCALLGGETAEMPDFYKEGE YDLSGFAVGAVKKDKVIDGKNIMEGDIIIGLPSSGVHSNGFSLARRVLEKSGLSLNDQLPRNDG MITTVGEALMAPTVIYVKQVLEIINKGGVKGIAHITGGGFTDNIPRVFPSGLGAKIFTAAWEVP PVFRWIQEVTNFLLLEPMESGRSSSLRLKLVSMTQLGLIWWL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0831500_circ_g.2

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